Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05215 ATGGATGAAAGTGACCATGAAGAATGCAACACAGGTTTATGTCTAGGATTAGGAGGAGGACACGTGGCAAAAAAGGAGAAGAAGCAAAAATTAGTGAACAAACCTTTGATGGCTTGTTTTGACCTAGCTTTTGAGCTTTCTCCAAAAGGAGAAGCCATGAGCGTATACAAGAATAATCATAATATCAAGAAGGGTGAAAGATTGAGCTTGGAGAGACAACAAAATTATCCGAATGTAACGTCCAGCACCGATTCTGAAAACAATAACAACAACAACAACAACAACAACAACAACAACAACAATGATAGTAGAAAGAAACTGAGGTTAACAAAGGAGCAATCAACCATCCTTGAGAACACCTTCAAGCACCACAACACTCTTAATCCGGTCCAAAAAAAATCACTTGCTGACCAATTGAATTTAAAGACTAGACAAATTGAAGTTTGGTTTCAAAATAGGAGAGCAAGGACGAAGCTGAAGCAGACAGAAGTGGATTATGAGTTATTGAAAAAACATTGTCAAAATCTAAGTGATGAGAACAGAAGATTGAAGAAAGAATTGCAAGAACTCAAACTTGTACAATCTCCATTATGCCCTCAATTACGTACTCCATCAAAACCCAAAATGTGTTCTTCTTGCGACCAGAAAGTACTGTTGAAGCTCAATGAACTAGAGAACAACAATTAA 687 0.3712 MDESDHEECNTGLCLGLGGGHVAKKEKKQKLVNKPLMACFDLAFELSPKGEAMSVYKNNHNIKKGERLSLERQQNYPNVTSSTDSENNNNNNNNNNNNNNNDSRKKLRLTKEQSTILENTFKHHNTLNPVQKKSLADQLNLKTRQIEVWFQNRRARTKLKQTEVDYELLKKHCQNLSDENRRLKKELQELKLVQSPLCPQLRTPSKPKMCSSCDQKVLLKLNELENNN 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05215 228 MobiDBLite consensus disorder prediction 71 103 - -
Trre15g05215 228 ProSiteProfiles 'Homeobox' domain profile. 100 160 IPR001356 GO:0003677
Trre15g05215 228 SMART halz 160 201 IPR003106 GO:0006355|GO:0043565
Trre15g05215 228 ProSitePatterns 'Homeobox' domain signature. 135 158 IPR017970 GO:0000981|GO:0006355
Trre15g05215 228 Pfam Homeodomain 104 158 IPR001356 GO:0003677
Trre15g05215 228 Gene3D - 101 159 - -
Trre15g05215 228 Pfam Homeobox associated leucine zipper 160 191 IPR003106 GO:0006355|GO:0043565
Trre15g05215 228 CDD homeodomain 104 161 IPR001356 GO:0003677
Trre15g05215 228 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 217 - -
Trre15g05215 228 MobiDBLite consensus disorder prediction 65 104 - -
Trre15g05215 228 SUPERFAMILY Homeodomain-like 101 169 IPR009057 -
Trre15g05215 228 SMART HOX_1 102 164 IPR001356 GO:0003677
Trre15g05215 228 Coils Coil 152 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05215 Trre-Chr15 61583522 61584996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05215 85 215 Homeobox Transcription Factor Family AT3G60390 57.143 2.84e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre15g05215 Homeodomain 8.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05215 K09338 - gmx:100812222 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05215 15 61583522 61584996 Trre3g02333 3 21645361 21647193 PCT