Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05213 ATGCCTCGAAGATTACTTCAACACCAAGAAACACCTCCTTCATCCACTTCCGCGCCACACCACCGCTCTGAAGCTTTGTTCTTTTTCCTTGGAGGGATTGTAGTGCTAATCATATTGCTCATTATTATCTTTGTATGCTGGAAGCGGATTAAACGCGCCCCAACAAAATTACCGGAGAAGACCGAGTCGCCACCAAGTCAGACTCAGAAACATGCGGAAGATCAGATGATAAAGAAAATTGTCCCAACTGATCAACAGTCAGGACTCATGGAGTTCATTAGTGGGAACCTTAGGACAATTAGCTACTTTGATTTCCAGACATTGAGAAAGGCCACGAAGAATTTTCATCGCAGAAATCTTCTCGGAAGTGGTGGATTTGGCCCTGTCTATCAGGGAAAGTTGGTAGATGGAAGGGTAGTTGCTTGTAAGAAACTATCTCTTGACAAATCTCAGCAAGGAGAAAGAGAATTTCTAGCAGAAGTGAGAATGATCACAAGCATCCAGCACAAAAATCTCGTTCGCCTTCTCGGATGTTGCTCAGATGGACCTCAAAGGATACTTGTTTACGAATACATGAAGAACAAAAGTTTGGACCTCTTTATACACGGGAAGAGCGACGAATATCTTAATTGGAGCACAAGATTCCAAATTATTCTTGGAGTAGCGCGGGGATTGCAATACCTTCACGAGGATTCGCATGTAAGAATTGTTCACCGAGATATCAAAGCAAGCAACATTCTTCTTGACGAAAAGTTTCAACCGAGGATCGGAGATTTTGGACTAGCTAGGTTCTTCCCTGAAGACCAAGCTTACCTTAGCACTCAATTTGCCGGAACATTAGGTTATACAGCTCCGGAATATGCTATTAGAGGAGAACTGTCTGAAAAGGCAGATATCTATAGTTTTGGAGTTCTTGTGCTTGAAGTAATCAGCTGTAGAAAAAACACAGATCTCACTTTACCATCAGATATGCAGTACCTCCCTGAATATGCATGGAAACTTTATGAGAAGTCAATGGTGATGGATCTTATAGATCCAAAGTTGAGAGAAAAAGGATATGTAGAAAAAGATGTTATGCAAGCATTCCATGTAGCTTTTTTATGCCTTCAACCACATCCAGATTTAAGACCTGCAATGTCACAAATTGTAGCAATGTTGACATTTAAAATTGATATGGTTACAACACCAATGAGGCCGGCTTTCCTTGATCGAAGGCGCGTAATGGATGATGAAAACCATTCTTGGGAAGTTATATCTGAGGTTTTACAAACTCCTGTAGCTAGTGATTCTATGTTATAA 1299 0.4103 MPRRLLQHQETPPSSTSAPHHRSEALFFFLGGIVVLIILLIIIFVCWKRIKRAPTKLPEKTESPPSQTQKHAEDQMIKKIVPTDQQSGLMEFISGNLRTISYFDFQTLRKATKNFHRRNLLGSGGFGPVYQGKLVDGRVVACKKLSLDKSQQGEREFLAEVRMITSIQHKNLVRLLGCCSDGPQRILVYEYMKNKSLDLFIHGKSDEYLNWSTRFQIILGVARGLQYLHEDSHVRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEVISCRKNTDLTLPSDMQYLPEYAWKLYEKSMVMDLIDPKLREKGYVEKDVMQAFHVAFLCLQPHPDLRPAMSQIVAMLTFKIDMVTTPMRPAFLDRRRVMDDENHSWEVISEVLQTPVASDSML 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05213 432 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 34 411 - -
Trre15g05213 432 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 192 396 - -
Trre15g05213 432 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g05213 432 FunFam Cysteine-rich receptor-like protein kinase 10 79 191 - -
Trre15g05213 432 Pfam Protein tyrosine and serine/threonine kinase 118 386 IPR001245 GO:0004672|GO:0006468
Trre15g05213 432 ProSiteProfiles Protein kinase domain profile. 115 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05213 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Trre15g05213 432 Gene3D Phosphorylase Kinase; domain 1 75 191 - -
Trre15g05213 432 SMART serkin_6 115 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05213 432 CDD STKc_IRAK 121 387 - -
Trre15g05213 432 SUPERFAMILY Protein kinase-like (PK-like) 97 389 IPR011009 -
Trre15g05213 432 Gene3D Transferase(Phosphotransferase) domain 1 192 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05213 Trre-Chr15 61562119 61564582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05213 103 402 Receptor kinase-like Gene Family AT1G56120 49.667 3.09e-99 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre15g05213 PK_Tyr_Ser-Thr 8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05213 - - ccaj:109792436 657.521