Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05206 ATGTTACCACCACCTTATCACTCTTCTCTTATGTCTTTAGATCTTAATATTGAAGATCAAAACCATGAGGACCAGCTTTCTAGTCCAAATAATTCTTCTAATTCATTTTCTTCTTTATCTTCTTCATCATCATATCCTATTCTCTTAAACCAGCCAGATCAAGTTCAACAACCATCTTATTATTTCCAAACAAACCACTTTCCAAATGATCATGAAGAGGTTGAGAAGATTAATAGTATGGTCTCAAGTGGATCATGGGATAATAATTCAACTGGTGAAAACCATGAGATCATCAAAAGTAAACACAAGCTGACAATTAGATGGAAGAAAGAAGAAATTGATAAGAATAATATTGAAGCAGCTGATCATCATCATGATGGTAGTTCAGTGAAGTGGATGTCTTCAAAGATGAGAATGATGAAGAAGATGATAGTTTCAGATCAAACTAGTGGTGGTTCTTCTAACATAGCAAGCAATAATTCAAAGCAAAAATTTGAAGATCAAAAGCAACCACTTTCACCACTAGGAAGCAGCACCACCAACAATTATTCAAATCAAATTAGGGTTTGTTCTGATTGCAACACCACTAAGACCCCTCTTTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAACGCATGTGGGATTAGACAAAGGAAGGCAAGACGTGCTTTGGCATTGGCTGCAGCAGCGGCAAATGGTACAACAGTAACTGCTGATCAGGCATCTTCTGTGAAGAGAAAAAAGTTGCAGAAGAAAAAAGAGAATAAGTCCAAAATTAATTGTTCTACACATTTGAAAAAGAAGACCAAGTTTGAATCATCATCAGAAGAAGTACCATCTCATCAAAGTAAAAAGGAGTTGATAACTTTTGAAGATTTGAGATTAAGTTTGAGTAACAATTTGTCTGTTCAACAAGTTTTCCCTCAAGATGAAAAGGAAGCTGCTATTCTTCTCATGGCTTTATCTTATGGACTAGTCCATGGTTGA 993 0.3635 MLPPPYHSSLMSLDLNIEDQNHEDQLSSPNNSSNSFSSLSSSSSYPILLNQPDQVQQPSYYFQTNHFPNDHEEVEKINSMVSSGSWDNNSTGENHEIIKSKHKLTIRWKKEEIDKNNIEAADHHHDGSSVKWMSSKMRMMKKMIVSDQTSGGSSNIASNNSKQKFEDQKQPLSPLGSSTTNNYSNQIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALALAAAAANGTTVTADQASSVKRKKLQKKKENKSKINCSTHLKKKTKFESSSEEVPSHQSKKELITFEDLRLSLSNNLSVQQVFPQDEKEAAILLMALSYGLVHG 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05206 330 MobiDBLite consensus disorder prediction 146 181 - -
Trre15g05206 330 ProSitePatterns GATA-type zinc finger domain. 190 215 IPR000679 GO:0006355|GO:0043565
Trre15g05206 330 Gene3D - 185 287 IPR013088 GO:0006355|GO:0008270
Trre15g05206 330 Pfam GATA zinc finger 190 223 IPR000679 GO:0006355|GO:0043565
Trre15g05206 330 CDD ZnF_GATA 189 221 IPR000679 GO:0006355|GO:0043565
Trre15g05206 330 FunFam GATA transcription factor 21 184 286 - -
Trre15g05206 330 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 9 330 - -
Trre15g05206 330 ProSiteProfiles GATA-type zinc finger domain profile. 184 220 IPR000679 GO:0006355|GO:0043565
Trre15g05206 330 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 224 - -
Trre15g05206 330 SMART GATA_3 184 235 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05206 Trre-Chr15 61529055 61530661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05206 99 330 C2C2-Gata Transcription Factor Family AT4G26150 44.177 1.07e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre15g05206 GATA 5.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05206 - - mtr:25494244 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05206 15 61529055 61530661 Trre15g05206 15 61529055 61530661 ECH
Trre15g05206 15 61529055 61530661 Trre3g02337 3 21722346 21724183 PCT