Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05200 ATGGCCCCTCGAATCCTTCTTTGCGGCGACGTTTTTGGCCGCCTTAACCAGCTCTTCAAGCGCGTATCATCGGTTAACAAATCGGCGGGTCCATTCGACGCGCTCTTGTGCGTTGGCCAATTCTTCCCTGACTCACCGGACCTGCTTGATGAGTTCATGGCATACATTGAAGGTGGATCCCACATTCCTCTCCCAACTTACTTCATCGGCGATTACGGTGTTGCCGCCCCTAAAATTTTGTTGGCGGCTTCTAAAGATTCTGCCAACCTTGGTTTCAAGATGGACGGCTTGAAAGTTTGCGATAATTTGTTTTGGTTGAAAGGCAGTGGCAAATTCAACCTCTTCGGGTTATCTGTCACCTATTTATCTGGTAGGAAATCGTCGAATGTTCAGCAGTTTGGAACTTACAGTGAAGATGATGTTGATGCTCTGCGTGCGATAGCTGAAGAACCTGTAGTTGTTGATTTTGGGGTCACAAATGGAGCAGCTGCTTCAGATATTCCTGCTGGATTCTCAGATTCTACCGGCAGCGATTCAACCATATCAGAGTTAGTACAAGAGATTAAACCACGCTATCATATCGCTGGTTCTAAAGGTATATACTATGCCCGTGAACCATATTCCAATGTTGATGCCGTGCATGTTACACGTTTCATAGGACTTGCTTCTGTTGGAAATAGAGATAAGCAGAAATTTATTCATGCAATTTCTCCAACACCTGCATCCACCATGTCTTCATCTGAGATTGCCATGAAAACCACAAATACCACCTTATCACCATACACATCTGCGGAGGAAAAAGCTTCTCCAAAGGATACTGTAAAGAGATCCAGTGACGGTATCTCTGATTCTCAACATTGGAGATATGATGTTTCACAAAAGCGACAGAAATATGACGCTCTGTGTTTCAAATTCGTATCTTCTGACTCTTGTCCACGGGGAGAGACATGCAATTTTCGACATGACACAGATGCAAGGGAGCACTGCTTGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAAGGTTCCAGATTGCCGCTATAGGCACAGCTTGCAGGATGAAGGTGATAAGCATCCTTCCAGGAGGCCTGGATCAGAAAATACAAGGTCTAGCAGGTCAAGAGAATGTTGGTTTTGCTTGTCTAGCCCCAATGTGGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTATCTAGCACTGGCTAAAGGCCCACTTGTTGAAGACCATGTGCTGATAATACCTGTTGAGCATATGCCAAATACTTTATTTTTGTCTTCTGAATCTGATGCTGAGCTCTTAAGGTTTCAGAACAGTCTCAAGAGATATTTCAAGAGCCAAGAAAAGGAAGTCATATTTTTTGAGTGGGCTTCCATACGTGGTACTCACGCCAATCTTCAGGTCATTCCCATTCCATCTTCCAAAGCAGCTATGGTTGAAAAAGCATTTAACTTAGCTGCACAAAAGTTGGAATTTAAATTTGTGACAAAGAAATTTGATAGTATTTCTGATGGAAGAAAGTTTTTGAAGACGCAAGTCGATGGGAATTCAAGCTTGTTCTATGCTGAAATACCAGGAGGTACAATTTTGCTGCACCATGTTGATGAGAAAGACACATTTCCTGTCCAATTTGGACGTGAGGTTCTGGCGGGGTTGCTTAACATGGCAGATAATGCAGATTGGAGGAATCGTAAACATAACAAAGATGAAGAGATGAAAATTGTTGAAGATTTCAAGGACCGATTTCAAGAATATGATCCAAACCATTGA 1782 0.4254 MAPRILLCGDVFGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPDLLDEFMAYIEGGSHIPLPTYFIGDYGVAAPKILLAASKDSANLGFKMDGLKVCDNLFWLKGSGKFNLFGLSVTYLSGRKSSNVQQFGTYSEDDVDALRAIAEEPVVVDFGVTNGAAASDIPAGFSDSTGSDSTISELVQEIKPRYHIAGSKGIYYAREPYSNVDAVHVTRFIGLASVGNRDKQKFIHAISPTPASTMSSSEIAMKTTNTTLSPYTSAEEKASPKDTVKRSSDGISDSQHWRYDVSQKRQKYDALCFKFVSSDSCPRGETCNFRHDTDAREHCLRGVCFDFLNKGKCEKVPDCRYRHSLQDEGDKHPSRRPGSENTRSSRSRECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPNTLFLSSESDAELLRFQNSLKRYFKSQEKEVIFFEWASIRGTHANLQVIPIPSSKAAMVEKAFNLAAQKLEFKFVTKKFDSISDGRKFLKTQVDGNSSLFYAEIPGGTILLHHVDEKDTFPVQFGREVLAGLLNMADNADWRNRKHNKDEEMKIVEDFKDRFQEYDPNH 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05200 593 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Trre15g05200 593 SMART c3hfinal6 330 355 IPR000571 GO:0046872
Trre15g05200 593 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Trre15g05200 593 FunFam Zinc finger CCCH domain-containing protein 59 356 482 - -
Trre15g05200 593 Gene3D - 292 368 - -
Trre15g05200 593 MobiDBLite consensus disorder prediction 354 374 - -
Trre15g05200 593 CDD MPP_CWF19_N 6 224 - -
Trre15g05200 593 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 592 IPR040194 -
Trre15g05200 593 Gene3D - 374 503 IPR036265 -
Trre15g05200 593 MobiDBLite consensus disorder prediction 256 282 - -
Trre15g05200 593 ProSiteProfiles Zinc finger C3H1-type profile. 333 356 IPR000571 GO:0046872
Trre15g05200 593 Pfam Protein similar to CwfJ C-terminus 1 373 487 IPR006768 -
Trre15g05200 593 MobiDBLite consensus disorder prediction 268 282 - -
Trre15g05200 593 Pfam Protein similar to CwfJ C-terminus 2 501 590 IPR006767 -
Trre15g05200 593 SUPERFAMILY HIT-like 379 476 IPR036265 -
Trre15g05200 593 MobiDBLite consensus disorder prediction 354 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05200 Trre-Chr15 61489036 61494793 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre15g05200 CwfJ_C_1 6.2e-39 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05200 K24939 - gmx:100782106 1012.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05200 15 61489036 61494793 Trre15g05200 15 61489036 61494793 ECH