Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05180 ATGGCGGTGTCTCACGGTGGATACGACGGTGAAATCGGTGGCTCTAGGTCTTATCTAAAACCAGAGTTATTCGATAATAGTGCAGGTTCAAGTTCTTGTCAATACGACGACGTTTTAAGCGAAAGAAAAGACTCAGAACTAACCGTAGAAGAAGGTGCTACAGCTTCTCTTGCTATTCACATCAAAGAAGAAGTTGTTGAAGAAGACGGTGCTAACGCTTCATCTTCTTCGATCAAGTTTCCAAAACCAATGGAAGGTTTACACGATGCTGGTCCACCACCGTTTCTCAAGAAGACGTATGAAATGGTGGAGGATCCGGAAACTGACCCGATTGTTTCCTGGAGTGCTTCTCGTGATAGTTTCATTGTTTGGGACTCTCATGAATTCTCCAAAATCCTTCTTCCAAAGTACTTTAAGCACAATAATTTCTCCAGCTTTATTCGTCAGCTCAACACCTATGGGTTTAGGAAGGTTGATTCAGAACGTTGGGAGTTTGCAAATGAAGGGTTTCAAGGAGGGAAAAAACATCTCTTGAAGACCATAAGAAGGAGAAGTAAGTATAACAAAGTGCATCAAGGAGGATTCAATTTGATGAAGCCTCCTGTTGAATCTGAAGTGGAGAAACTGAAGAAAGATCAGAACATGTTAAAATTGGAAATTCTGAAGCTAAGGCAGCAACAAGAGAATTCAAATATTCAACTCACAAATGTTCATGAGCGTGTTCGGCACGCTGAATTGAAGCAATACCAGATGATGTATTTCCTCACCAAAATGGCCAAAAGGCCATTGTTTATGGAGCAGTTAATCCAAAAGATTAAGCGGAATAGAGAGGTTGATGGTAATATAGATCTTGCTAAAAGACCTAGATTGCTTGGAACACAAGGTACTAGTGTAGACTATAGAACACAGGGTTGTCAACAATTTGCTACTTTGCAATCTGACTTGAATGGACTTTTTCCTGAAAATATGAACACTGGTAAAATGGAACCACCACCAGTTCCAACTCGAATGGAAAATGGATTGTGTGGCACTTTGCATGAATTGAAGGCTTTTGGTGGTTCTAGACAAAATGTGCAAGATGTATCTTCTGCTTATCATGTTATGTCAGAGAATCTATTGGGTGAAAATTCAGTTGTTGATGAAGAAATGGATGTGAATGACTCTAACATCTATCTTGAATTAGAGGATTTGATAACTAAGCCAACAGATTGGGGTGGATCTCCAAGTGGATTGGTGGGACAAACTAGTTAA 1251 0.3997 MAVSHGGYDGEIGGSRSYLKPELFDNSAGSSSCQYDDVLSERKDSELTVEEGATASLAIHIKEEVVEEDGANASSSSIKFPKPMEGLHDAGPPPFLKKTYEMVEDPETDPIVSWSASRDSFIVWDSHEFSKILLPKYFKHNNFSSFIRQLNTYGFRKVDSERWEFANEGFQGGKKHLLKTIRRRSKYNKVHQGGFNLMKPPVESEVEKLKKDQNMLKLEILKLRQQQENSNIQLTNVHERVRHAELKQYQMMYFLTKMAKRPLFMEQLIQKIKRNREVDGNIDLAKRPRLLGTQGTSVDYRTQGCQQFATLQSDLNGLFPENMNTGKMEPPPVPTRMENGLCGTLHELKAFGGSRQNVQDVSSAYHVMSENLLGENSVVDEEMDVNDSNIYLELEDLITKPTDWGGSPSGLVGQTS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05180 416 SMART hsfneu3 91 184 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre15g05180 416 Gene3D - 88 185 IPR036388 -
Trre15g05180 416 PRINTS Heat shock factor (HSF) domain signature 133 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre15g05180 416 PRINTS Heat shock factor (HSF) domain signature 95 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre15g05180 416 PRINTS Heat shock factor (HSF) domain signature 146 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre15g05180 416 Pfam HSF-type DNA-binding 95 184 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre15g05180 416 Coils Coil 206 226 - -
Trre15g05180 416 SUPERFAMILY "Winged helix" DNA-binding domain 91 184 IPR036390 -
Trre15g05180 416 ProSitePatterns HSF-type DNA-binding domain signature. 134 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre15g05180 416 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 81 301 IPR027725 -
Trre15g05180 416 FunFam Heat shock transcription factor 1 88 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05180 Trre-Chr15 61310660 61312772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05180 81 319 HSF AT2G26150 48.988 1.33e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre15g05180 HSF_DNA-bind 1.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05180 K09419 - gmx:100818430 537.339