Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05176 ATGGAACCTCGTGTTGGGAATAAGTTTCGTCTTGGTAGGAAGATCGGTAGCGGCTCCTTTGGGGAGATCTACTTAGGTACTAATATTCAAACTAATGAGGAGGTTGCAATTAAGCTTGAAAATGTCAAGACTAAGCATCCTCAGTTGCTATACGAGTCCAAGTTGTACAGAATTCTCCAGGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGAGTGGAGGGAGATTACAACGTTTTAGTGATGGATCTGCTTGGACCCAGTCTTGAAGATCTATTTAACTTTTGTAGTAGAAAGTTGTCACTCAAGACAGTTCTTATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCGAAATCAATGCTACATCGAGATATCAAGCCAGATAATTTTCTAATGGGATTAGGAAGGCGTGCGAACCAGGTTTATGCTATTGATTTCGGTTTGGCTAAGAAATACAGAGATAGTTCAACCCATCAACACATTCCTTACAGGGAAAATAAAAATTTAACTGGCACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAACAGAGTCGAAGAGATGATTTAGAGTCTCTTGGTTATGTCTTGATGTACTTCCTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCAGGAACCAAGAAACAGAAGTATGAAAAAATCAGTGAAAAAAAGGTTTCTACATCGATTGAAGCCTTATGTCGGGGTTATCCAACAGAATTTGCATCATACTTCCATTACTGCCGCTCGTTAAGGTTTGATGATAAGCCAGATTATGCTTATCTCAAAAGGATATTCCGCGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTACGTGTTTGACTGGACCATCTTGAAGTATCAGCAATCACAGCTTGCCACACCTCCAACACGGGCCATTGTACCTGGTGCTGGAACCAGTTCTGCAATGCCACCTGTTGATAGACATGCAGGAGCAGAAGAAGGACAACCCCCTGGTTTGGTTTCGGGGGATTCCTCGAGGCGCAGAATGTCAGGACCCATTTTGAATACCCTATCAAGTTCCAATGCCTTGGGTCAGTCAAGTGGATCTAGGCGAGTTGCTGTTTCCAGTAGTCGTGATGCATTTACTGGTGCCGAGTCAGATGTTCGTACACGCACTGCTGAGGCTAGCCCTGGAGTAGCACACCGAATTTTGGGTGGGCAAAGGAGTTCACCAATTGGATCTTCTGATCCCCAAAGAGTGTCACGGGTTGGGAGAAATGCTTCTCAAGCCAGTAATTATGAAAGTGCCCTTAGGGGCATGGAGGGTTTGCAGTTAGAGAATGATGAGAGGACCCATTATTAA 1350 0.4356 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSMLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAIVPGAGTSSAMPPVDRHAGAEEGQPPGLVSGDSSRRRMSGPILNTLSSSNALGQSSGSRRVAVSSSRDAFTGAESDVRTRTAEASPGVAHRILGGQRSSPIGSSDPQRVSRVGRNASQASNYESALRGMEGLQLENDERTHY 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05176 449 PANTHER CASEIN KINASE-RELATED 9 374 - -
Trre15g05176 449 MobiDBLite consensus disorder prediction 404 431 - -
Trre15g05176 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre15g05176 449 CDD STKc_CK1_delta_epsilon 8 282 - -
Trre15g05176 449 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Trre15g05176 449 FunFam Putative Casein kinase I 1 85 - -
Trre15g05176 449 MobiDBLite consensus disorder prediction 311 449 - -
Trre15g05176 449 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05176 449 MobiDBLite consensus disorder prediction 344 379 - -
Trre15g05176 449 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05176 449 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Trre15g05176 449 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05176 449 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre15g05176 449 FunFam Casein kinase I isoform delta-like 1 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05176 Trre-Chr15 61292485 61296783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05176 7 223 EF-hand Containing Proteins AT2G17890 26.667 5.74e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre15g05176 Pkinase 1.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05176 K02218 - gmx:100785851 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05176 15 61292485 61296783 Trre15g05176 15 61292485 61296783 ECH
Trre15g05176 15 61292485 61296783 Trre3g02402 3 22996107 23001464 PCT