Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05162 ATGGAGGATATATCTTCAAGTGTTGCAGTACCATTTACACTTGGAAATTTGATTCAAAAGGATGCTACGGTTACGACTCATATGGAGATAACCGGGTTAAAGCTTATGGCAAATACTGCTGCAGCTTTGATATTAAATCCTGCTGTTGGAAATGAAAATCATGCTGATGTTAGTCTTCAACATCAAATCACGGTATCTGCGGAGGTAAAGGAGAATCAAGTTGGATCCGCCGTTGTCTCGGAAATGGTGATTGAATGCGAGAGTAATTGGATCTTGAGTGAAAACCACAATCAGGCCATAAAGGAAGATGAGATCATGTTAGCTGTGGATTTTCAGTGTCTGCATAACTCAGGCTCTCAATCGGTGGCAGATTCACCAATAATCGTCACGGTTGGTGATGATATTCATGGTAAGTTTAGTATAAACGAGGTACTTCCGGTACTGAAGCCAGAGCAGAATACGGTTTCTATTGCAATGAATATTGAGAGTGAAAATCGAACTGTGTCAGAAGAGGTTGATCCAAAACTATCTGCTATGATTCTTGATCAGTTGGAAAAGGAGAACAAAACACAGAGAACAAGCTACCAGAATGGTTTGGAAGTGAGTAGTGATCCTCTTTGGGGGTTCTCATCAATCTGTGGAAATAGACTGGAGATGGAAGATGCTATTGCTGTTAAACCTCGACTTTTTCAAGTCCCTACACAGATGCTAATGGATGACTATGTGAATGAAAACACAAAAGACTCACCAGCCCATTTTTTTGGTGTCTATGATGGACATGGGGGCTTTCAGGTTGCTAATTACTGCCAAGAACGTCTTCATTCAGTGTTGATTGAGGAGATTGAAACGCAACAACGGTCAAGTTTGGCCGAAACAAACGAGAGAAATGATTGGAAGGACAATTGGAAGAAAGCATTGTCCAATTGTTTTCAGAAAGTAGATGATGAGATTGAAGTTGTTGCTCCTGAGACTGCTGGCTCCACCGCAGTGGTTGCCATTTTAAGTCAAACCCACATAATAGTTGCAAACTGTGGGGATTCAAGAGCTGTCTTGTATCGCGGGAAAGAAGCCATTGCATTGTCTTCTGACCACAAACCAAATAGAGAGGATGAAAGAGCTAGAATAGAAGCTGCAGGAGGAAGAGTCATACATTGGAAAGGATACAGAGTTCTTGGTGTCTTGGCCATGTCAAGGTCCATAGGTGATAGATACTTGAAACCATGGATAATTCCAGAACCAGAAGTTAATATTGTGCAAAGAGAGAAAAACGACGAGTGCCTTATTTTAGCAAGTGATGGTTTATGGGATGTAATTACAAATGAAGAAGCCTGTGAAGTTGCAAGAAAGCGAATCCTTCTTTGGCATAAGAAGTATGGTGACAATGGAACAACGGTACATGACAAAGGAGAAGGAGGAGTTGATCTTGCATCTCAGTCTGCCGCTGAGTATCTATCTAAACTCGCCCTCCACAGAGGAAGCGGCGATAACATATCTGTAATTGTGATAGACTTAAAGGCTGTGAGAAAATTGAAGAGAAAGACATAA 1545 0.4129 MEDISSSVAVPFTLGNLIQKDATVTTHMEITGLKLMANTAAALILNPAVGNENHADVSLQHQITVSAEVKENQVGSAVVSEMVIECESNWILSENHNQAIKEDEIMLAVDFQCLHNSGSQSVADSPIIVTVGDDIHGKFSINEVLPVLKPEQNTVSIAMNIESENRTVSEEVDPKLSAMILDQLEKENKTQRTSYQNGLEVSSDPLWGFSSICGNRLEMEDAIAVKPRLFQVPTQMLMDDYVNENTKDSPAHFFGVYDGHGGFQVANYCQERLHSVLIEEIETQQRSSLAETNERNDWKDNWKKALSNCFQKVDDEIEVVAPETAGSTAVVAILSQTHIIVANCGDSRAVLYRGKEAIALSSDHKPNREDERARIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWIIPEPEVNIVQREKNDECLILASDGLWDVITNEEACEVARKRILLWHKKYGDNGTTVHDKGEGGVDLASQSAAEYLSKLALHRGSGDNISVIVIDLKAVRKLKRKT 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05162 514 ProSitePatterns PPM-type phosphatase domain signature. 253 261 IPR000222 GO:0043169
Trre15g05162 514 CDD PP2Cc 208 504 IPR001932 -
Trre15g05162 514 PANTHER PROTEIN PHOSPHATASE 184 504 IPR015655 GO:0004722|GO:0006470
Trre15g05162 514 SUPERFAMILY PP2C-like 204 505 IPR036457 -
Trre15g05162 514 Gene3D - 195 514 IPR036457 -
Trre15g05162 514 SMART PP2C_SIG_2 233 504 IPR001932 -
Trre15g05162 514 FunFam Protein phosphatase 2C 51 200 512 - -
Trre15g05162 514 Pfam Protein phosphatase 2C 210 497 IPR001932 -
Trre15g05162 514 ProSiteProfiles PPM-type phosphatase domain profile. 206 504 IPR001932 -
Trre15g05162 514 SMART PP2C_4 196 502 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05162 Trre-Chr15 61209773 61211812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05162 192 513 PP2C-type Phosphatase Gene Family AT4G26080 61.538 6.13e-137 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05162 K14497 - gmx:100789207 716.842