Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05157 ATGGTTTGGTTTCAATGCGAAGATTGCGGAGACAACCTCAAAAAACCCAAGTTGCCCAATCACTTCCGATCATGTTCCGCCACCAAGCTTTCGTGCATTGACTGTGGCCAAATGTTCGGTCAAGACACAGTTCAGAACCACACGCAGTGTATTACAGAAGCGGAAAAGTATGGTCCAAAAGGACAAGGCAAAACTTTGAATGCTGCAGCTGCCAAGCCTGTCAAAGATGGAAAACAAAGACCAGTAGTTGATACTAATGTGGGTTTATCTCAACGTCCTCCGTGGTTCTGTAGCTGTAGTCTTTGCAATACAAAAGCTACAAGTAAACAAGCGCTTCTTCTCCATGCTGAAGGAAAGAAACACGGGGCAAAAGCCCGAGCCTTCCATGCTTCGCAGCAGCCACCAGTCCAGACGGATAAACCTGCTACTGATGCAAAGGATGGCGTGGAGACTGCTTCTAATGGTACGGCAAAAGATGACAAAAATGTAGAGCAGCCAAAATTGCAAGAGTCTTCTGAACAAAATAACTTGAAACCAGGGAGTGAAGTTTCTTCAGAAAACAAAAAGAGGAAACTTGAAGCATTAGAGGGTGGTCTTATTAAAAAATGCAAGAATGGCACATTAGCTGACACGGAAAATGGTGAAGTAATTCAGGGCGAGAAAGCAGGAGAGAAGAAAATAAAATGGAAGAAGTTTATCAAAGCAGCCTTGAAAACTCATTCTGATGGATTGAAGATGAAGAAACTGAGAAAAGTTGTTCACAAAGCACTGCAAGAATCTGGTATTGTAGTAAAGGAAAATGAATTGAGTGAAGCGCTTGAGCAGAAGATAAATTCCAGCTCCAAATTTGTAGTTGAGAACAAGTATGTGCGATTAGTGGCCAAAGATTGA 891 0.4242 MVWFQCEDCGDNLKKPKLPNHFRSCSATKLSCIDCGQMFGQDTVQNHTQCITEAEKYGPKGQGKTLNAAAAKPVKDGKQRPVVDTNVGLSQRPPWFCSCSLCNTKATSKQALLLHAEGKKHGAKARAFHASQQPPVQTDKPATDAKDGVETASNGTAKDDKNVEQPKLQESSEQNNLKPGSEVSSENKKRKLEALEGGLIKKCKNGTLADTENGEVIQGEKAGEKKIKWKKFIKAALKTHSDGLKMKKLRKVVHKALQESGIVVKENELSEALEQKINSSSKFVVENKYVRLVAKD 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05157 296 Gene3D - 1 50 - -
Trre15g05157 296 Pfam Zinc-finger of C2H2 type 99 121 - -
Trre15g05157 296 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Trre15g05157 296 Gene3D Classic Zinc Finger 89 132 - -
Trre15g05157 296 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Trre15g05157 296 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Trre15g05157 296 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Trre15g05157 296 FunFam cell growth-regulating nucleolar protein-like 1 50 - -
Trre15g05157 296 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 293 IPR039999 GO:0003677
Trre15g05157 296 MobiDBLite consensus disorder prediction 123 188 - -
Trre15g05157 296 MobiDBLite consensus disorder prediction 168 182 - -
Trre15g05157 296 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Trre15g05157 296 SUPERFAMILY beta-beta-alpha zinc fingers 91 128 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05157 Trre-Chr15 61187340 61189465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05157 78 226 C2H2 Transcription Factor Family AT2G19380 41.026 3.98e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05157 K15263 - gmx:100790703 431.409