Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05154 ATGTCTGCACCAGTGAACATTATTGTTGGTTCTCATGTCTGGGTTGAAGATCCAGCACTAGCATGGATTGGTGGAGAAGTTACTAAAATCAATGGTGAAGAAGTCCATGTTCGCACCGGAGATGGGAAAACAGTTGTCAAAAGTATCTCAAAGGTTTTTCCCAAGGATAATGAAGCCCCACCTGGAGGTGTAGATGACATGACAAAATTGTCATACTTGCATGAGCCTGGAGTTCTGAACAACTTGGCAACTCGATATGAACTTAATGAAATCTATACATATACTGGAAATATCCTGATTGCGATAAACCCATTTCAAAGGTTGCCACATTTATATGATACTCACATGATGCAACAATACAAAGGAGCTACATTTGGAGAATTGAGCCCCCATGTTTTTGCAGTTGCAGATGTTGCATACAGGGCAATGATCAATGAAGGAAAAAGCAACTCAATCCTGGTTAGTGGTGAGAGTGGGGCTGGTAAGACAGAAACAACAAAAATGCTTATGCGATATCTTGCATATCTCGGGGGCCGATCCGGCGTAGAAGGACGGACAGTTGAACAACAAGTTTTAGAATCTAATCCAGTTCTTGAAGCATTTGGAAATGCCAAAACAGTGAGAAATAATAATTCAAGTCGTTTTGGTAAATTTGTTGAGATACAATTTGACAACAAGGGAAGGATTTCTGGGGCAGCTATCCGAACTTATCTACTTGAGAGGTCCCGTGTTTGTCAAGTTTCAGATCCCGAAAGAAATTACCACTGTTTTTACCTTCTCTGTGCTGCACCAGCTGAGGAAAGAGAAAAGTTTAAGCTGGGAAATCCTAGCTCCTTCCATTACCTAAACCAATCCAACTGCTATGTGCTGGATGGAGTGGATGATGCTGAAGAATATCTTGCAACTCGAAGGGCAATGGATATTGTTGGAATCAGTGAGGAGGAGCAGGAGGCTATTTTTAGGGTCGTAGCAGCAGTTTTGCACCTTGGAAATATTGAATTTGCAAAAGGAGAGGAGATCGATTCTTCTGTCCTTAAGGATGAGAAGTCTAGGTTCCATCTTAATACAACTGCTGAGCTTCTCAGGTGTGATGCTAAGAGCTTGGAAGATGCACTGATCCAGCGTGTGATGGTAACACCTGAGGAAGTTATTACAAGAACACTTGATCCTGTTGCAGCTCTCGGTAGCAGGGATGCATTAGCTAAAACTGTTTATTCTCGTTTGTTTGACTGGCTAGTGGAGAAGATCAACAATTCAATTGGGCAAGATCCAAATTCAAAATCTATCATTGGAGTTCTTGATATCTATGGGTTTGAAAGTTTTAAGTTTAACAGTTTTGAGCAGTTCTGTATTAATTTTACAAATGAGAAGCTGCAGCAACATTTTAATCAGCATGTCTTTAAAATGGAACAAGAAGAATACACCAAAGAAGAAATCGATTGGAGTTACATAGAGTTTGTTGACAACCAAGATGTTTTGGATCTAATTGAGAAGAAACCTGGAGGAATAATTTCACTTCTTGATGAAGCCTGTATGTTTCCTAAGTCTACACATGAAACATTTGCTCAGAAGTTGTACCAGACATTCAAAAACAACAAGCGCTTTATCAAACCGAAACTTTCTCGAACTAATTTCACAATATCTCATTACGCCGGGGAGGTGACATATCAAGCTGATATGTTTCTTGACAAAAACAAGGATTATGTGGTGGCAGAACATCAGGATCTGTTGATAGCCTCAAAATGCTCCTTTGTGGCAGGTCTATTTCCCCCCTCTCCAGAAGAGTCTTCAAAATCATCAAAATTCTCTTCAATAGGATCTCGCTTTAAGTTACAACTTCAGTCTTTGATGGAGACCCTAAGTTCAACAGAACCTCACTATATTAGATGCGTGAAGCCAAATAATGTTCTCAAGCCTGCTATTTTTGAAAATGTCAATATTATTCAACAATTGCGCTGTGGTGGTGTTCTAGAGGCAATTAGAATCAGCTGTGCTGGATATCCTACAAGACGGACCTTTTACGAATTTCTCAACCGATTTGGTGTTCTTGCCCCTGAAGTTCTTGATGGAAACTATGATGACAAGGTTGCATGCCAAAAGATCCTCGGTAAAATGGGCATGAAAGGTTATCAGATTGGCAAGACAAAGGTTTTCCTAAGAGCAGGCCAAATGGCTGAGTTGGATGCAAGAAGATCCGAGGTCCTTGGAAATGCAGCTAGAATCATCCAGAGGCAAACACGTACCCATATTGCACGAAAGGAATTCATTGAATTGCGCCGAGCTGCAATTAGTTTGCAATCTAATTTGCGAGGAATATTGGCCCGGAAGCTTTATGAGCAGTTGCGACGTGAAGCAGCAGCTTTGAAAATAGAAAAGAACTTCAAAGGATACATTGACAGAAAATCTTACTCAAAAGCACGATCATCTGCAATCATATTGCAGACAGGTTTAAGGTCTATGAAGGCTCGCGATGAATTTAGATTTAGAAAGCAAACAAAGGCTGCAATTAAAATTCAGGCTCAATTTCGTCGGAAAATTGCATATTCATATTATAAAAGATTGCAAAAGGCTGTGGTTGTTACTCAGTGTGGTTGGAGGAGCAGAGTTGCTAGAAAAGAACTTAGAATGCTTAAAATGGCTGCAAGAGATACAGGGGCTCTTAAAGAAGCAAAAGACAAACTAGAAAAGCGTGTTGAAGAACTTACATGGCGTTTGCAAATTGAGAAGCGTTTGAGAACTGATTTAGAAGAGGAAAAGGCACAAGAGGCTGCCAAGTTACATGATGCTTTACATGCAATGCAAATACAAGTTGCAGAAGCAAATGCCAGGGTCATCAAAGAGCGCGAGGCAGCACAGAAAGCCATTGAAGAAGCACCTCCGGTTATTAAAGAGACTCCTGTTATAATTGAAGATACCGAAAAGATTAATTCTTTATTGGCTGAAGTCAATAGTTTGAAGGAATCACTGTTATTAGAAAGAAAGGCTAAAGAAGAGGCCAAAAAAGCTCAGGCTGAGGCTGAAGCTAGAAATAAGGAGCTGGTTAAAAAAGTTGAGGATTCTGACCGCAAAGCGGATCAACTCCAAGAATTGGTTCAGAGATTGGAGGAAAAAATTTCAAACGCAGAGTCAGAAAATCAAGTTCTTCGCCAGCAAGCATTGGTTGCATCACCAACTGGAAAAGCTCTTACTGCAAGACCTAGGACAGTGATTCTTCAGAGGACACCAGAAAATGGAAATACTCTAAATGGTGAAGCAAAAACTTCATCGGATATGACTCTTGCACTATCCAATGTACGTGAGCCTGAATCTGAAGGAAAACCACAGAAATCTCTCAATGATAAACAACAAGAAAACCAGGACTTGTTGATCAAGTGCATATCACAAGATTTGGGATTTTCTGGTGGCAAACCTGTTGCTGCATGCGTCATATATAAATGCCTTCTACACTGGAGGTCATTTGAAGTTGAAAGAACAACCGTCTTTGACCGTATCATTCAAACAATAGCTACAGCTGTTGAGGCCCAGGATAATACTGATGTATTAGCCTATTGGTTATCTAATACATCCACTTTATTGATGCTTCTCCAACGCACCCTTAAAGCAAGTGGAGCTGCTAACTTAACACCACAACGCCGAAGAACAGCCTCATCTTCTCTGTTTGGAAGAATGTCTCAAGGGCTAAGGGGGGCATCTCCTCAAAGTGCTGGATTGCCATTTATAAACGGCCGAGGTCTCAGTAGACTTGATGGTTTACGACAAGTAGAAGCAAAATATCCAGCACTTCTGTTTAAGCAACAGCTTACTGCCTTCCTTGAGAAATTATATGGAATGATACGAGACAACCTGAAAAAGGAGATATCCCCATTACTTGGACTGTGCATACAGGCTCCAAGGACCTCTCGTCAAGGTTTAGTTAAAGGGCGCTCACATGCTAATGCGGTTGCTCAGCAAGCTTTAATAGCTCATTGGCAAAGTATTGTGAAAAGCTTGAACAGCTATCTAAAGATAATGAAAGCAAATTATTCGCCTCCTTTCTTGGTCCGTAAAGTGTTCACTCAAATATTCTCATTCATCGATGTTCAATTATTCAACAGTCTTCTGCTGCGTCGTGAGTGTTGTTCATTCAGCAACGGGGAGTATGTGAAGACAGGTTTGGCTGAATTAGAACAGTGGTGCATCGAGGCAACAGAGGAGTACACTGGCTCAGCTTGGGAGGAACTGAAACATATTAGGCAGGCAGTTGGATTCCTGGTGATACATCAAAAACCCAAGAAGTCCCTGAATGAAATAACTAAGGAGCTTTGTCCTGGTCTCAGTATACAACAGTTATACAGGATAAGTACAATGTACTGGGATGACAAATACGGCACTCACAGTGTGTCTACAGACGTTACAACAACCATGAGAGCTATGGTTGCCGAAGACTCTTCTAATTCTGTCAGCACTTCTTTCCTATTAGATGACGACTCGAGCATTCCATTTTCTGTGGACGACATCTCCAAATCCATGCAAGAAGTAGAAGTTGCTGACGTGGATCCTCCTCCATTGATACGTGAGAACTCAGGGTTCGGTATACTTTCACTAACTCAGGCTTCTAATATTGGTACAGCCATACAGGTTGGTGTCCAGTCATTGTTGTTGTCACACCTGCCCTAG 4656 0.4113 MSAPVNIIVGSHVWVEDPALAWIGGEVTKINGEEVHVRTGDGKTVVKSISKVFPKDNEAPPGGVDDMTKLSYLHEPGVLNNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMQQYKGATFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDNKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPAEEREKFKLGNPSSFHYLNQSNCYVLDGVDDAEEYLATRRAMDIVGISEEEQEAIFRVVAAVLHLGNIEFAKGEEIDSSVLKDEKSRFHLNTTAELLRCDAKSLEDALIQRVMVTPEEVITRTLDPVAALGSRDALAKTVYSRLFDWLVEKINNSIGQDPNSKSIIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIISLLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTNFTISHYAGEVTYQADMFLDKNKDYVVAEHQDLLIASKCSFVAGLFPPSPEESSKSSKFSSIGSRFKLQLQSLMETLSSTEPHYIRCVKPNNVLKPAIFENVNIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLDGNYDDKVACQKILGKMGMKGYQIGKTKVFLRAGQMAELDARRSEVLGNAARIIQRQTRTHIARKEFIELRRAAISLQSNLRGILARKLYEQLRREAAALKIEKNFKGYIDRKSYSKARSSAIILQTGLRSMKARDEFRFRKQTKAAIKIQAQFRRKIAYSYYKRLQKAVVVTQCGWRSRVARKELRMLKMAARDTGALKEAKDKLEKRVEELTWRLQIEKRLRTDLEEEKAQEAAKLHDALHAMQIQVAEANARVIKEREAAQKAIEEAPPVIKETPVIIEDTEKINSLLAEVNSLKESLLLERKAKEEAKKAQAEAEARNKELVKKVEDSDRKADQLQELVQRLEEKISNAESENQVLRQQALVASPTGKALTARPRTVILQRTPENGNTLNGEAKTSSDMTLALSNVREPESEGKPQKSLNDKQQENQDLLIKCISQDLGFSGGKPVAACVIYKCLLHWRSFEVERTTVFDRIIQTIATAVEAQDNTDVLAYWLSNTSTLLMLLQRTLKASGAANLTPQRRRTASSSLFGRMSQGLRGASPQSAGLPFINGRGLSRLDGLRQVEAKYPALLFKQQLTAFLEKLYGMIRDNLKKEISPLLGLCIQAPRTSRQGLVKGRSHANAVAQQALIAHWQSIVKSLNSYLKIMKANYSPPFLVRKVFTQIFSFIDVQLFNSLLLRRECCSFSNGEYVKTGLAELEQWCIEATEEYTGSAWEELKHIRQAVGFLVIHQKPKKSLNEITKELCPGLSIQQLYRISTMYWDDKYGTHSVSTDVTTTMRAMVAEDSSNSVSTSFLLDDDSSIPFSVDDISKSMQEVEVADVDPPPLIRENSGFGILSLTQASNIGTAIQVGVQSLLLSHLP 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05154 1551 Gene3D - 833 882 - -
Trre15g05154 1551 Gene3D - 786 832 - -
Trre15g05154 1551 Gene3D - 735 785 - -
Trre15g05154 1551 CDD MYSc_Myo11 76 720 IPR036018 -
Trre15g05154 1551 ProSiteProfiles Dilute domain profile. 1162 1474 IPR002710 -
Trre15g05154 1551 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Trre15g05154 1551 Pfam Myosin N-terminal SH3-like domain 9 46 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre15g05154 1551 FunFam Class V myosin 439 578 - -
Trre15g05154 1551 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Trre15g05154 1551 PANTHER MYOSIN 58 1462 - -
Trre15g05154 1551 SMART iq_5 830 852 IPR000048 GO:0005515
Trre15g05154 1551 SMART iq_5 734 756 IPR000048 GO:0005515
Trre15g05154 1551 SMART iq_5 782 804 IPR000048 GO:0005515
Trre15g05154 1551 SMART iq_5 853 875 IPR000048 GO:0005515
Trre15g05154 1551 SMART iq_5 757 779 IPR000048 GO:0005515
Trre15g05154 1551 SMART iq_5 805 827 IPR000048 GO:0005515
Trre15g05154 1551 FunFam Myosin XI D 667 730 - -
Trre15g05154 1551 CDD MyosinXI_CBD 1113 1497 IPR037975 GO:0007015
Trre15g05154 1551 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Trre15g05154 1551 FunFam Myosin heavy chain 252 307 - -
Trre15g05154 1551 Coils Coil 937 957 - -
Trre15g05154 1551 ProSiteProfiles IQ motif profile. 737 764 IPR000048 GO:0005515
Trre15g05154 1551 Pfam IQ calmodulin-binding motif 759 778 IPR000048 GO:0005515
Trre15g05154 1551 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515
Trre15g05154 1551 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Trre15g05154 1551 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Trre15g05154 1551 Coils Coil 985 1051 - -
Trre15g05154 1551 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g05154 1551 Pfam DIL domain 1350 1453 IPR002710 -
Trre15g05154 1551 Gene3D Kinesin motor domain 65 662 IPR036961 -
Trre15g05154 1551 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g05154 1551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 785 IPR027417 -
Trre15g05154 1551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 882 IPR027417 -
Trre15g05154 1551 FunFam unconventional myosin-Va 737 785 - -
Trre15g05154 1551 Gene3D - 439 623 - -
Trre15g05154 1551 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre15g05154 1551 Gene3D - 252 310 - -
Trre15g05154 1551 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Trre15g05154 1551 MobiDBLite consensus disorder prediction 1002 1022 - -
Trre15g05154 1551 FunFam unconventional myosin-Va 833 881 - -
Trre15g05154 1551 Gene3D - 667 733 - -
Trre15g05154 1551 ProSiteProfiles IQ motif profile. 783 809 IPR000048 GO:0005515
Trre15g05154 1551 Coils Coil 884 925 - -
Trre15g05154 1551 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g05154 1551 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g05154 1551 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g05154 1551 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g05154 1551 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g05154 1551 SMART DIL_2 1349 1456 IPR002710 -
Trre15g05154 1551 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g05154 1551 FunFam Myosin 2 312 427 - -
Trre15g05154 1551 ProSiteProfiles IQ motif profile. 831 858 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05154 Trre-Chr15 61160245 61175113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05154 67 1526 Myosins gene family AT5G20490 82.603 0.0 2509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05154 K10357 - gmx:100777802 2753.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05154 15 61160245 61175113 Trre15g05154 15 61160245 61175113 ECH