Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05143 ATGGGAAGAAGCCCTTGTTGTGCAAAGGAAGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCACTGAATACATTAAGCTCCATGGTGAAGGAAAATGGAGAAACCTTCCAAAAAGAGCAGGTTTAAAAAGATGTGGAAAAAGTTGTAGACTTAGATGGTTGAATTATCTTAGACCAGATATTAAGAGAGGTAATATATCGTCCGATGAAGAAGAACTTATCATTAGACTTCACAAACTACTCGGAAACCGATGGTCTTTAATAGCCGGAAGACTTCCAGGGCGAACAGACAATGAAATAAAGAATTACTGGAACACGAATTTAGGAAAAAAGGTTAAGGATCTTAATCAACAAAACACCAACAATTCTTCTCCTACTAAACCTTCTGCTCAACCAAAAAATGCAAAGATCAAACAGAAACAACAGATCAATAATCCTAAGCCAATGAAGCCAAACTCGAATGTTGTCCGTACAAAAGCTACCAAATGTTCTAAGGTATTGTTCATAAACTCACCACCAATGCATAATTTGCAGAACAAAGCTGAGGCAGAGACAAAAACAAAGACATCAATGTTGGTTAATGGTGTAGCTAGTGATTCAATGAGTAACAACGAAATGGAACGAGGTAATGGATTTTTGTCATTTCGCGATGAAGAGAAAGAACTATCCGCAGATTTACTAGATGATTTTAACATCGCGGATGACATTTGCTTATCCGAATTTCTAAACTCCGATTTCTCAAATGCGTGCAATTTCGATTACAATGATCTATTGTCACCTTGTTCGGATCAAACTCAAATGTTCTCTGATGATGAGATTCTCAAGAATTGGACACAATGTAACTTTGCTGATGAGACAAATGTGTCCAACAACCTTCATTCTTTTGCTTCCTTTCTCGAATCCAGTGAGGAAGTACTAGGAGATTGA 939 0.3749 MGRSPCCAKEGLNRGAWTAHEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQQNTNNSSPTKPSAQPKNAKIKQKQQINNPKPMKPNSNVVRTKATKCSKVLFINSPPMHNLQNKAEAETKTKTSMLVNGVASDSMSNNEMERGNGFLSFRDEEKELSADLLDDFNIADDICLSEFLNSDFSNACNFDYNDLLSPCSDQTQMFSDDEILKNWTQCNFADETNVSNNLHSFASFLESSEEVLGD 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05143 312 Gene3D - 14 66 - -
Trre15g05143 312 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre15g05143 312 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre15g05143 312 SMART sant 66 114 IPR001005 -
Trre15g05143 312 SMART sant 13 63 IPR001005 -
Trre15g05143 312 MobiDBLite consensus disorder prediction 119 158 - -
Trre15g05143 312 CDD SANT 16 61 IPR001005 -
Trre15g05143 312 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre15g05143 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre15g05143 312 FunFam MYB-related transcription factor 13 66 - -
Trre15g05143 312 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Trre15g05143 312 FunFam Transcription factor TT2 70 158 - -
Trre15g05143 312 Gene3D - 71 151 - -
Trre15g05143 312 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre15g05143 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre15g05143 312 CDD SANT 71 112 IPR001005 -
Trre15g05143 312 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05143 Trre-Chr15 61077097 61078236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05143 1 116 MYB Transcription Factor Family AT5G49330 74.138 1.42e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre15g05143 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05143 K09422 - gmx:100802704 413.305