Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05141 ATGAATGGAAGAAACAGACATCCTTTTACTCCAACTCAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAATACATGGCTTCTGGTATCTCTATTCCACCTGATCTTCTACTCACCATCAAAAGAAGCTACTTAGACTCTTCAAGGCTCTTACCTCACCACTCTCAACACTTTGGGTGGAACTATTTGCCAATGGGATTAGGAAGAAAAATAGACCCAGAGCCAGGAAGATGTAGAAGAACAGATGGAAAGAAATGGAGGTGTTCAAAAGAAGCATATCCAGATTCAAAGTACTGTGAGAGACACATGCATAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACATCAACAACAAACACAGATTCTGCAGCTGCTACTTCATCAATCTTATCAATGACTAAAAATAGTAGTTTTGATCCTGATAATACTGCAGCACTAAACCCAACAACTCATGACACTGCTTACCATTACCCTCATCAACACTCTTCTTATGCTTCTTCCCAACTTAACCACTCTTTCCTCTACCATAACCCTCCATCTTCAAGGCCTAATTTCTCATTTCAAGAGAATAGTAGTACTCCCATGTTTCTTGACAGTACTGGTTCTTCCTCTCACAATAACAACAACACTAATTGCAGGTATGTTTATGGACTGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACTGAACCTTCTGGAACTATGAGAAGTTTATCAGCTTCATCAATGGATGATACATGGCAACTCAAACCACTTACTATAAGTTCCTCTTCCTCTTCAAAACAGAGGAATTGCTCTGGTTTATCCAATGACAATGAGTACTCTTATTTGCAACTTCAAAGCCTAAGTAACAACAATAACTCAAAACAACCACAACAACAAGATCAAAGTTATTACATCTCAGGTAATGAAGAAACATTCATGAAACAAGAGAAAGAAGAACCTCAAAAGATTTTTCATCGTTTCTTTGATGAATGGCCACCTAAAAGCAGTAGAAATTCATGGCTTGATTTAGATGATAAATCATCCACCACTCAGCTTTCAATTTCCATTCCAACATCATCTCATGATTTCACAACTTTTAGTTCCACAAACCAACGAGATGGTTAA 1125 0.3822 MNGRNRHPFTPTQWQELEHQALIYKYMASGISIPPDLLLTIKRSYLDSSRLLPHHSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTSTTNTDSAAATSSILSMTKNSSFDPDNTAALNPTTHDTAYHYPHQHSSYASSQLNHSFLYHNPPSSRPNFSFQENSSTPMFLDSTGSSSHNNNNTNCRYVYGLKEEVDEHAFFTEPSGTMRSLSASSMDDTWQLKPLTISSSSSSKQRNCSGLSNDNEYSYLQLQSLSNNNNSKQPQQQDQSYYISGNEETFMKQEKEEPQKIFHRFFDEWPPKSSRNSWLDLDDKSSTTQLSISIPTSSHDFTTFSSTNQRDG 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05141 374 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre15g05141 374 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre15g05141 374 Pfam WRC 74 116 IPR014977 -
Trre15g05141 374 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre15g05141 374 ProSiteProfiles WRC domain profile. 73 117 IPR014977 -
Trre15g05141 374 PANTHER GROWTH-REGULATING FACTOR 5 8 362 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05141 Trre-Chr15 61055161 61057083 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05141 5 116 GRF Transcription Factor Family AT3G13960 70.435 1.33e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre15g05141 WRC 7.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05141 - - cam:101508073 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05141 15 61055161 61057083 Trre15g05141 15 61055161 61057083 ECH
Trre15g05141 15 61055161 61057083 Trre3g02494 3 24350364 24352828 PCT