Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05126 ATGAAATTTACGTGGAAATCGATATTTCCAAGTTGTTATAAGGGTGAAGAAGATTACTCTTCACCCAAACCAGCAGCAGCAACGACGAAAGTTGTTGCTACTACAAAAGATGATGTTGCTACAAAGACCAATTCTTTTAATAGAATTTCTCTCACGGATCTGAGTTTTCCAAGTGCTACAACACTTTCAGAAGATCTTTCAATATCTCTAGTTGGTTCTAATCTATATGTTTTTACACTTGCTGAGCTTAAGATAATTACTCAGAGCTTTTCTTCTAGTAATTTTCTTGGTGAAGGTGGGTTTGGACCTGTTCATAAAGGATTCATTGATGATAAGGTTAGAGCTGGACTTGAACCTCAACCTGTGGCTGTTAAGCTTCTAGATTTGGATGGTTCTCAAGGTCATAAAGAATGGCTGACTGAAGTTGTGTTTCTTGGTCAATTGAGACATCAACACCTTGTGAAGCTGATTGGATATTGTTGTGAAGAGGAACATAGACTTTTGGTTTATGAGTATTTACCAAGAGGAAGCTTAGAACATCAACTATTTAGAAGATATTCAGCATCATTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTCTAGCCTTTTTACATGATGCAAAGAAACCAGTTATCTATAGAGATTTCAAAGCTTCAAACATCTTATTAGACTCTGATTATAATGCAAAACTCTCTGATTTTGGCTTGGCAAAAGATGGTCCAGAAGGAGATGATACACATGTTTCAACTCGGGTTATGGGAACTCAAGGTTATGCTGCCCCGGAATACATCATGACAGGACATTTGACAGCAATGAGTGATGTATATAGTTTTGGAGTTGTCCTATTGGAACTATTAACCGGTAGAAGATCGGTGGACAAAACACGTCCACCAAGAGAACATAATTTAGTCGAATGGGCCAGACCATTTTTAAACGATGCACGTAGACTTAGCAGAATAATGGATCCAAGACTTGAAGGACAGTTTTCTGAATCAGGAGCAAGAAAAGCAGCTGCATTAGCTTATCAATGTTTAAGTCATAGACCAAGAAATAGACCTTCCATGTCTACAGTAGTTACTACTCTTGAACCTCTTCAAAATTATGTAGATATTCCAATTGGTACTTTTGTTTACACAGCTCCAAGTGATGTTAGTAACAATGAAGTACAAAAAGAGAGTAGTACTAGTAATACTACTCCTTCTGAGACACCAAAGGAGAGATCAAGAAGAGATCATCGTAGAAATCAACATCAAAGTAATAATGGTACTAGTCATCATAAGAATAATACTAATGATCAAGTGATTAAAGATGGCCATGGAGAAGAATATTATGATACACCTAAGGAGAGAAAGAGAGAAAATGGTCATAATCATAGAAGTAATCATCAGCATCGTCACAATGGACATAGGCATCCACTAAAGTCACCAAAAACAAGATCACCAAATGAGGTAGGACATAAAAGTGGGTCACACTCATCAAATTCACCAGATACCTCTATTACATCAGAAAGCCAAGGAAATTAA 1539 0.3697 MKFTWKSIFPSCYKGEEDYSSPKPAAATTKVVATTKDDVATKTNSFNRISLTDLSFPSATTLSEDLSISLVGSNLYVFTLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKVRAGLEPQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHQHLVKLIGYCCEEEHRLLVYEYLPRGSLEHQLFRRYSASLPWSTRMKIAVGAAKGLAFLHDAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKTRPPREHNLVEWARPFLNDARRLSRIMDPRLEGQFSESGARKAAALAYQCLSHRPRNRPSMSTVVTTLEPLQNYVDIPIGTFVYTAPSDVSNNEVQKESSTSNTTPSETPKERSRRDHRRNQHQSNNGTSHHKNNTNDQVIKDGHGEEYYDTPKERKRENGHNHRSNHQHRHNGHRHPLKSPKTRSPNEVGHKSGSHSSNSPDTSITSESQGN 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05126 512 FunFam Probable serine/threonine-protein kinase PBL8 173 397 - -
Trre15g05126 512 Gene3D Phosphorylase Kinase; domain 1 50 172 - -
Trre15g05126 512 MobiDBLite consensus disorder prediction 435 461 - -
Trre15g05126 512 MobiDBLite consensus disorder prediction 487 512 - -
Trre15g05126 512 Gene3D Transferase(Phosphotransferase) domain 1 173 390 - -
Trre15g05126 512 MobiDBLite consensus disorder prediction 462 480 - -
Trre15g05126 512 MobiDBLite consensus disorder prediction 389 512 - -
Trre15g05126 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Trre15g05126 512 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05126 512 CDD STKc_IRAK 96 370 - -
Trre15g05126 512 MobiDBLite consensus disorder prediction 408 423 - -
Trre15g05126 512 PANTHER OS01G0588500 PROTEIN-RELATED 46 371 - -
Trre15g05126 512 SUPERFAMILY Protein kinase-like (PK-like) 65 368 IPR011009 -
Trre15g05126 512 FunFam Serine/threonine-protein kinase BIK1 57 172 - -
Trre15g05126 512 Pfam Protein tyrosine and serine/threonine kinase 94 367 IPR001245 GO:0004672|GO:0006468
Trre15g05126 512 MobiDBLite consensus disorder prediction 389 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05126 Trre-Chr15 60928120 60930240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05126 78 414 Glycoside Hydrolase AT3G07070 51.176 1.34e-104 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre15g05126 PK_Tyr_Ser-Thr 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05126 - - mtr:25494166 803.897