Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05125 ATGACTGTGATGAAATTTACGTGGAAATCGATATTTCCAAGTTGTTATAAGGGTGAAGAAGATTACTCTTCACCCAAACCAGCAGCAGCAACGACGAAAGTTGTTGCTACTACAAAAGATGATGTTGCTACAAAGACCAATTCTTTTAATAGAATTTCTCTCACGGATCTGAGTTTTCCAAGTGCTACAACACTTTCAGAAGATCTTTCAATATCTCTAGTTGGTTCTAATCTATATGTTTTTACACTTGCTGAGCTTAAGATAATTACTCAGAGCTTTTCTTCTAGTAATTTTCTTGGTGAAGGTGGGTTTGGACCTGTTCATAAAGGATTCATTGATGATAAGGTTAGAGCTGGACTTGAACCTCAACCTGTGGCTGTTAAGCTTCTAGATTTGGATGGTTCTCAAGGTCATAAAGAATGGCTGACTGAAGTTGTGTTTCTTGGTCAATTGAGACATCAACACCTTGTGAAGCTGATTGGATATTGTTGTGAAGAGGAACATAGACTTTTGGTTTATGAGTATTTACCAAGAGGAAGCTTAGAACATCAACTATTTAGAAGATATTCAGCATCATTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTCTAGCCTTTTTACATGATGCAAAGAAACCAGTTATCTATAGAGATTTCAAAGCTTCAAACATCTTATTAGACTCTGATTATAATGCAAAACTCTCTGATTTTGGCTTGGCAAAAGATGGTCCAGAAGGAGATGATACACATGTTTCAACTCGGGTTATGGGAACTCAAGGTTATGCTGCCCCGGAATACATCATGACAGGACATTTGACAGCAATGAGTGATGTATATAGTTTTGGAGTTGTCCTATTGGAACTATTAACCGGTAGAAGATCGGTGGACAAAACACGTCCACCAAGAGAACATAATTTAGTCGAATGGGCCAGACCATTTTTAAACGATGCACGTAGACTTAGCAGAATAATGGATCCAAGACTTGAAGGACAGTTTTCTGAATCAGGAGCAAGAAAAGCAGCTGCATTAGCTTATCAATGTTTAAGTCATAGACCAAGAAATAGACCTTCCATGTCTACAGTAGTTACTACTCTTGAACCTCTTCAAAATTATGTAGATATTCCAATTGGTACTTTTGTTTACACAGCTCCAAGTGATGTTAGTAACAATGAAGTACAAAAAGAGAGTAGTACTAGTAATACTACTCCTTCTGAGACACCAAAGGAGAGATCAAGAAGAGATCATCGTAGAAATCAACATCAAAGTAATAATGGTACTAGTCATCATAAGAATAATACTAATGATCAAGTGATTAAAGATGGCCATGGAGAAGAATATTATGATACACCTAAGGAGAGAAAGAGAGAAAATGGTCATAATCATAGAAGTAATCATCAGCATCGTCACAATGGACATAGGCATCCACTAAAGTCACCAAAAACAAGATCACCAAATGAGGTAGGACATAAAAGTGGGTCACACTCATCAAATTCACCAGATACCTCTATTACATCAGAAAGCCAAGGAAATTAA 1548 0.3702 MTVMKFTWKSIFPSCYKGEEDYSSPKPAAATTKVVATTKDDVATKTNSFNRISLTDLSFPSATTLSEDLSISLVGSNLYVFTLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKVRAGLEPQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHQHLVKLIGYCCEEEHRLLVYEYLPRGSLEHQLFRRYSASLPWSTRMKIAVGAAKGLAFLHDAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKTRPPREHNLVEWARPFLNDARRLSRIMDPRLEGQFSESGARKAAALAYQCLSHRPRNRPSMSTVVTTLEPLQNYVDIPIGTFVYTAPSDVSNNEVQKESSTSNTTPSETPKERSRRDHRRNQHQSNNGTSHHKNNTNDQVIKDGHGEEYYDTPKERKRENGHNHRSNHQHRHNGHRHPLKSPKTRSPNEVGHKSGSHSSNSPDTSITSESQGN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05125 515 Gene3D Phosphorylase Kinase; domain 1 53 175 - -
Trre15g05125 515 MobiDBLite consensus disorder prediction 490 515 - -
Trre15g05125 515 ProSiteProfiles Protein kinase domain profile. 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05125 515 PANTHER OS01G0588500 PROTEIN-RELATED 49 374 - -
Trre15g05125 515 FunFam Probable serine/threonine-protein kinase PBL8 176 400 - -
Trre15g05125 515 FunFam Serine/threonine-protein kinase BIK1 60 175 - -
Trre15g05125 515 MobiDBLite consensus disorder prediction 438 464 - -
Trre15g05125 515 MobiDBLite consensus disorder prediction 392 515 - -
Trre15g05125 515 CDD STKc_IRAK 99 373 - -
Trre15g05125 515 Pfam Protein tyrosine and serine/threonine kinase 97 370 IPR001245 GO:0004672|GO:0006468
Trre15g05125 515 MobiDBLite consensus disorder prediction 411 426 - -
Trre15g05125 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Trre15g05125 515 MobiDBLite consensus disorder prediction 465 483 - -
Trre15g05125 515 SUPERFAMILY Protein kinase-like (PK-like) 68 371 IPR011009 -
Trre15g05125 515 Gene3D Transferase(Phosphotransferase) domain 1 176 392 - -
Trre15g05125 515 MobiDBLite consensus disorder prediction 392 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05125 Trre-Chr15 60928120 60930249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05125 81 417 Glycoside Hydrolase AT3G07070 51.176 9.04e-105 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre15g05125 PK_Tyr_Ser-Thr 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05125 - - mtr:25494166 803.897