Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05111 ATGTCGACTTCATCACAGTATTCTACGTTTTCCGGCAACAACAACAAATCATCAGAGAAATCAACGTTTTCTCAAACTTGTAACCTATTAAGCCAATACATCAAGGAGAAGGGTAGTTTCGGAACTCTCTCCCTTCAGAACCCATGCACCCTCCAACCAACTGGATCACCTGATTCATCTTGTTCTGGAACAACAACCATGGATTTCTTTCCAACAAAAGACCTCAAAACTGTGGATTTTTTATCTACAAGTGGATTTAACTCTGTTGCTGCTAAAGAGACTAAAACTGCACAATTGACATTGTTTTATAATGGAGAAGTTATTGTGTTGGATGATTTTCCTGCTGATAAAGTTGAGGAGCTTAAGTCATTTGCCAAACCTCAGATTCAACCTTCTTCACTAATTATTGGAGAACCAACAATTGCTAGAAAAGCTTCACTTCTTCGATTTCTGGAAAAGAGGAAAGATAGAGTTACTCCCAAATCACCATACTCTAAACCAAGCAATTAA 510 0.3784 MSTSSQYSTFSGNNNKSSEKSTFSQTCNLLSQYIKEKGSFGTLSLQNPCTLQPTGSPDSSCSGTTTMDFFPTKDLKTVDFLSTSGFNSVAAKETKTAQLTLFYNGEVIVLDDFPADKVEELKSFAKPQIQPSSLIIGEPTIARKASLLRFLEKRKDRVTPKSPYSKPSN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05111 169 MobiDBLite consensus disorder prediction 1 21 - -
Trre15g05111 169 Pfam tify domain 95 121 IPR010399 -
Trre15g05111 169 Pfam Jas motif 141 165 IPR018467 -
Trre15g05111 169 ProSiteProfiles Tify domain profile. 92 127 IPR010399 -
Trre15g05111 169 SMART tify_2 92 127 IPR010399 -
Trre15g05111 169 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 167 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05111 Trre-Chr15 60815295 60816330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05111 1 164 Tify Gene Family AT1G19180 36.283 7.53e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre15g05111 tify 5.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05111 K13464 - gmx:100802800 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05111 15 60815295 60816330 Trre15g05111 15 60815295 60816330 ECH
Trre15g05111 15 60815295 60816330 Trre3g02632 3 26895461 26897926 PCT