Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05110 ATGCTTCCACAGAAATTGAGGCACAATCCAATGATGCAACACTCTCTCTACCACCACCCTGCTCTTATCACTCCTCCACAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTCGGCAACATTCATCCTCAGGTTACAGAACCACTTCTTCAAGAGCTTTTTTCAAGTGCTGGCGCACTTGAAGGGTGCAAGCTTATTCGGAAAGAGAAGTCATCTTATGGCTTTGTGGACTACTTTGATCGCAGTTCAGCTACAATTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGACAGGCTATCAAAGTTAACTGGGCTTATGCTCGTGGCCAAAGAGAAGACACGTCAGGACACTTCCATATTTTTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACTCTGTATGCTTGCTTCTCCGTGTATTCTAGTTGCTCAGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTATCTTTTCGAAATCAGCAGGAAGCCCAAAGTGCCATAAACGATTTAACTGGTAAATGGCTCGGAAGTAGGCAGATTCGTTGTAATTGGGCCACAAAAGGAGCTAATATCAATGGTGAAAATCAGAGTTCAGATTCCAAAGGTGTTGTGGAGTTAACTAGCGGAACATCTGAAGAAGGGCAGGAAATAACCAGTGATGACGGTCCTGAGAAGAATCTTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCCGAGGTTACTTCTGTTGATCTCCATCATCATTTTCATGCCCTCGGTGTTGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGGTACAGTACCCATGGTGAAGCAGCTCTTGCTATACAGATGGGAAATGCTCGATTTCTGTTTGGCAAACCCATCAAGTGCTCATGGGGTAGCAAGCCAACTCCTCCAGGAACAGCTTCTACCCCTCTTCCCCCGCCAGTTTCTACGCATGTACCAGTGCCAGGGCTTTCACTTGCCGGTCTTGCAGCTTATGAACGCCAGCTGGCTTTGAGCAAAATGAATGGTACACATGTCCTTCTACAACAGCAGAATCAGCATGCCCTAAAGCAGGCAGCCATGGGAATGGGTGCTGTTGGGGCTGGGTATGGTGCAGGATTCCCTAATGCTGCCACCACCCAGCACCTTATGTACTATCAGTAA 1242 0.4646 MLPQKLRHNPMMQHSLYHHPALITPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEPLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRSSATIAIVTLNGRNIFGQAIKVNWAYARGQREDTSGHFHIFVGDLSPEVTDATLYACFSVYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANINGENQSSDSKGVVELTSGTSEEGQEITSDDGPEKNLQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAALAIQMGNARFLFGKPIKCSWGSKPTPPGTASTPLPPPVSTHVPVPGLSLAGLAAYERQLALSKMNGTHVLLQQQNQHALKQAAMGMGAVGAGYGAGFPNAATTQHLMYYQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05110 413 Gene3D - 24 130 IPR012677 -
Trre15g05110 413 Gene3D - 131 226 IPR012677 -
Trre15g05110 413 MobiDBLite consensus disorder prediction 213 246 - -
Trre15g05110 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Trre15g05110 413 Gene3D - 230 330 IPR012677 -
Trre15g05110 413 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Trre15g05110 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Trre15g05110 413 SUPERFAMILY RNA-binding domain, RBD 29 127 IPR035979 GO:0003676
Trre15g05110 413 CDD RRM2_PUB1 130 209 - -
Trre15g05110 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Trre15g05110 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Trre15g05110 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Trre15g05110 413 FunFam Oligouridylate-binding protein 1C 229 330 - -
Trre15g05110 413 SUPERFAMILY RNA-binding domain, RBD 126 219 IPR035979 GO:0003676
Trre15g05110 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Trre15g05110 413 SMART rrm1_1 253 322 IPR000504 GO:0003723
Trre15g05110 413 SMART rrm1_1 132 205 IPR000504 GO:0003723
Trre15g05110 413 SMART rrm1_1 47 116 IPR000504 GO:0003723
Trre15g05110 413 SUPERFAMILY RNA-binding domain, RBD 245 330 IPR035979 GO:0003676
Trre15g05110 413 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 237 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05110 Trre-Chr15 60807706 60811933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05110 47 326 Eukaryotic Initiation Factors Gene Family AT2G23350 30.584 1.62e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05110 K13201 - gmx:100813736 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05110 15 60807706 60811933 Trre15g05110 15 60807706 60811933 ECH