Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05109 ATGCTTCCACAGAAATTGAGGCACAATCCAATGATGCAACACTCTCTCTACCACCACCCTGCTCTTATCACTCCTCCACAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTCGGCAACATTCATCCTCAGGTTACAGAACCACTTCTTCAAGAGCTTTTTTCAAGTGCTGGCGCACTTGAAGGGTGCAAGCTTATTCGGAAAGAGAAGTCATCTTATGGCTTTGTGGACTACTTTGATCGCAGTTCAGCTACAATTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGACAGGCTATCAAAGTTAACTGGGCTTATGCTCGTGGCCAAAGAGAAGACACGTCAGGACACTTCCATATTTTTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACTCTGTATGCTTGCTTCTCCGTGTATTCTAGTTGCTCAGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGAAGCCCAAAGTGCCATAAACGATTTAACTGGTAAATGGCTCGGAAGTAGGCAGATTCGTTGTAATTGGGCCACAAAAGGAGCTAATATCAATGGTGAAAATCAGAGTTCAGATTCCAAAGGTGTTGTGGAGTTAACTAGCGGAACATCTGAAGAAGGGCAGGAAATAACCAGTGATGACGGTCCTGAGAAGAATCTTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCCGAGGTTACTTCTGTTGATCTCCATCATCATTTTCATGCCCTCGGTGTTGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGGTACAGTACCCATGGTGAAGCAGCTCTTGCTATACAGATGGGAAATGCTCGATTTCTGTTTGGCAAACCCATCAAGTGCTCATGGGGTAGCAAGCCAACTCCTCCAGGAACAGCTTCTACCCCTCTTCCCCCGCCAGTTTCTACGCATGTACCAGTGCCAGGGCTTTCACTTGCCGGTCTTGCAGCTTATGAACGCCAGCTGGCTTTGAGCAAAATGAATGGTACACATGTCCTTCTACAACAGCAGAATCAGCATGCCCTAAAGCAGGCAGCCATGGGAATGGGTGCTGTTGGGGCTGGGTATGGTGCAGGATTCCCTAATGCTGCCACCACCCAGCACCTTATGTACTATCAGTAA 1221 0.466 MLPQKLRHNPMMQHSLYHHPALITPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEPLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRSSATIAIVTLNGRNIFGQAIKVNWAYARGQREDTSGHFHIFVGDLSPEVTDATLYACFSVYSSCSDARVMWDQKTGRSRGFGFEAQSAINDLTGKWLGSRQIRCNWATKGANINGENQSSDSKGVVELTSGTSEEGQEITSDDGPEKNLQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAALAIQMGNARFLFGKPIKCSWGSKPTPPGTASTPLPPPVSTHVPVPGLSLAGLAAYERQLALSKMNGTHVLLQQQNQHALKQAAMGMGAVGAGYGAGFPNAATTQHLMYYQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05109 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 319 IPR000504 GO:0003723
Trre15g05109 406 CDD RRM2_PUB1 130 202 - -
Trre15g05109 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Trre15g05109 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 196 IPR000504 GO:0003723
Trre15g05109 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 313 IPR000504 GO:0003723
Trre15g05109 406 FunFam Oligouridylate-binding protein 1A 129 203 - -
Trre15g05109 406 Gene3D - 13 127 IPR012677 -
Trre15g05109 406 SUPERFAMILY RNA-binding domain, RBD 126 212 IPR035979 GO:0003676
Trre15g05109 406 MobiDBLite consensus disorder prediction 206 240 - -
Trre15g05109 406 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 233 321 - -
Trre15g05109 406 FunFam Oligouridylate-binding protein 1C 222 323 - -
Trre15g05109 406 SUPERFAMILY RNA-binding domain, RBD 29 127 IPR035979 GO:0003676
Trre15g05109 406 SUPERFAMILY RNA-binding domain, RBD 238 323 IPR035979 GO:0003676
Trre15g05109 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Trre15g05109 406 Gene3D - 128 208 IPR012677 -
Trre15g05109 406 SMART rrm1_1 246 315 IPR000504 GO:0003723
Trre15g05109 406 SMART rrm1_1 132 198 IPR000504 GO:0003723
Trre15g05109 406 SMART rrm1_1 47 116 IPR000504 GO:0003723
Trre15g05109 406 Gene3D - 223 323 IPR012677 -
Trre15g05109 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 176 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05109 Trre-Chr15 60807706 60811933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05109 47 313 Eukaryotic Initiation Factors Gene Family AT3G16380 27.148 2.51e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05109 K13201 - gmx:100813736 674.855