Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05106 ATGGTTGTTAAAGCTGCTGCCACTGTTGTTACCCCCAAGCATACCACTGTCAAGCCACTAGGTGATAGAGTACTGGTAAAAATTAAGGATGCAGAAGAGAAAACTGTAGGCGGAATTATACTTCCATCAACGGCTCAATCAAAGCCTCAAGGGGGTGAGGTAGTTGCTGTTGGAGAAGGGAAGACAGTTGGGAAGAGCAAAGTTGAAATTAGTGTGAAGGCAGGTGCACAAGTTGTGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCAAAACATCTTATACTGAAGGATGATGACATTGTTGGTATCCTTGAAACCGAGGAGGTTAAGGATCTTAAACCCTTGAATGATAGAGTCTTGATAAAGGTTGCAGAAGCCGAGGAAAAAACTGCTGGTGGTTTGTTGCTCACACAGGCAACCAAGGAGAAACCATCCATTGGCACCGTAATAGCAGTTGGTCCAGGGCCTGTGGATGATGAAGGCAACCGAAAACCATTATCCATTACACCCGGGAATACAGTTCTGTACTCCAAATATGCAGGAAATGACTTCAAGGGCAAAGATGGTTCTGACTATATTGCTTTGAGAGCCTCGGATGTCATTGCTATCCTATCTTAG 627 0.4434 MVVKAAATVVTPKHTTVKPLGDRVLVKIKDAEEKTVGGIILPSTAQSKPQGGEVVAVGEGKTVGKSKVEISVKAGAQVVYSKYAGTEVEFNGSKHLILKDDDIVGILETEEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTQATKEKPSIGTVIAVGPGPVDDEGNRKPLSITPGNTVLYSKYAGNDFKGKDGSDYIALRASDVIAILS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05106 208 CDD cpn10 115 207 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05106 208 Pfam Chaperonin 10 Kd subunit 17 106 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05106 208 Pfam Chaperonin 10 Kd subunit 115 206 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05106 208 PANTHER 10 KDA HEAT SHOCK PROTEIN 112 206 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05106 208 Hamap Co-chaperonin GroES [groES]. 114 208 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05106 208 ProSitePatterns Chaperonins cpn10 signature. 17 41 IPR018369 GO:0005524|GO:0006457
Trre15g05106 208 FunFam 10 kDa chaperonin 112 208 - -
Trre15g05106 208 SUPERFAMILY GroES-like 15 108 IPR011032 -
Trre15g05106 208 PRINTS 10kDa chaperonin signature 17 32 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05106 208 PRINTS 10kDa chaperonin signature 94 107 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05106 208 PRINTS 10kDa chaperonin signature 39 60 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05106 208 PRINTS 10kDa chaperonin signature 73 85 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05106 208 CDD cpn10 16 107 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05106 208 FunFam 20 kDa chaperonin, chloroplastic 10 109 - -
Trre15g05106 208 SUPERFAMILY GroES-like 114 207 IPR011032 -
Trre15g05106 208 PIRSF Cpn21 1 208 IPR017416 GO:0006457|GO:0046914|GO:1901671
Trre15g05106 208 Hamap Co-chaperonin GroES [groES]. 16 108 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05106 208 ProSitePatterns Chaperonins cpn10 signature. 115 139 IPR018369 GO:0005524|GO:0006457
Trre15g05106 208 Gene3D GroES chaperonin 10 109 IPR037124 GO:0006457
Trre15g05106 208 Gene3D GroES chaperonin 110 208 IPR037124 GO:0006457
Trre15g05106 208 SMART Cpn10_2 16 107 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05106 208 SMART Cpn10_2 114 207 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05106 Trre-Chr15 60791553 60793547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05106 1 208 Calmodulin-binding Proteins AT5G20720 80.288 1.13e-119 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05106 K04078 - gmx:100804915 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05106 15 60791553 60793547 Trre15g05106 15 60791553 60793547 ECH
Trre15g05106 15 60791553 60793547 Trre3g02659 3 27679709 27682274 PCT