Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05105 ATGGCGACTACTCAACTCACTGCATCATCGATTTCTACAAGGAACCTGTCATCCTTTGAAGGGTTTCGAACTTCTGCAATTCAATTTCCTCGTAACAATGCTAGAATTGGCATTCTATCACAAAGATCGTTCCCTTCTATGGTTGTTAAAGCTGCTGCCACTGTTGTTACCCCCAAGCATACCACTGTCAAGCCACTAGGTGATAGAGTACTGGTAAAAATTAAGGATGCAGAAGAGAAAACTGTAGGCGGAATTATACTTCCATCAACGGCTCAATCAAAGCCTCAAGGGGGTGAGGTAGTTGCTGTTGGAGAAGGGAAGACAGTTGGGAAGAGCAAAGTTGAAATTAGTGTGAAGGCAGGTGCACAAGTTGTGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCAAAACATCTTATACTGAAGGATGATGACATTGTTGGTATCCTTGAAACCGAGGAGGTTAAGGATCTTAAACCCTTGAATGATAGAGTCTTGATAAAGGTTGCAGAAGCCGAGGAAAAAACTGCTGGTGGTTTGTTGCTCACACAGGCAACCAAGGAGAAACCATCCATTGGCACCGTAATAGCAGTTGGTCCAGGGCCTGTGGATGATGAAGGCAACCGAAAACCATTATCCATTACACCCGGGAATACAGTTCTGTACTCCAAATATGCAGGAAATGACTTCAAGGGCAAAGATGGTTCTGACTATATTGCTTTGAGAGCCTCGGATGTCATTGCTATCCTATCTTAG 765 0.4379 MATTQLTASSISTRNLSSFEGFRTSAIQFPRNNARIGILSQRSFPSMVVKAAATVVTPKHTTVKPLGDRVLVKIKDAEEKTVGGIILPSTAQSKPQGGEVVAVGEGKTVGKSKVEISVKAGAQVVYSKYAGTEVEFNGSKHLILKDDDIVGILETEEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTQATKEKPSIGTVIAVGPGPVDDEGNRKPLSITPGNTVLYSKYAGNDFKGKDGSDYIALRASDVIAILS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05105 254 ProSitePatterns Chaperonins cpn10 signature. 63 87 IPR018369 GO:0005524|GO:0006457
Trre15g05105 254 FunFam 20 kDa chaperonin, chloroplastic 56 155 - -
Trre15g05105 254 PIRSF Cpn21 1 254 IPR017416 GO:0006457|GO:0046914|GO:1901671
Trre15g05105 254 PANTHER 10 KDA HEAT SHOCK PROTEIN 158 252 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05105 254 Hamap Co-chaperonin GroES [groES]. 62 154 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05105 254 SUPERFAMILY GroES-like 160 253 IPR011032 -
Trre15g05105 254 CDD cpn10 161 253 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05105 254 PRINTS 10kDa chaperonin signature 119 131 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05105 254 PRINTS 10kDa chaperonin signature 140 153 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05105 254 PRINTS 10kDa chaperonin signature 63 78 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05105 254 PRINTS 10kDa chaperonin signature 85 106 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05105 254 SMART Cpn10_2 62 153 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05105 254 SMART Cpn10_2 160 253 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05105 254 SUPERFAMILY GroES-like 61 154 IPR011032 -
Trre15g05105 254 Hamap Co-chaperonin GroES [groES]. 160 254 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05105 254 Gene3D GroES chaperonin 156 254 IPR037124 GO:0006457
Trre15g05105 254 Gene3D GroES chaperonin 55 155 IPR037124 GO:0006457
Trre15g05105 254 Pfam Chaperonin 10 Kd subunit 63 152 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05105 254 Pfam Chaperonin 10 Kd subunit 161 252 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g05105 254 ProSitePatterns Chaperonins cpn10 signature. 161 185 IPR018369 GO:0005524|GO:0006457
Trre15g05105 254 FunFam 10 kDa chaperonin 159 254 - -
Trre15g05105 254 CDD cpn10 62 153 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05105 Trre-Chr15 60791553 60793685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05105 1 254 Calmodulin-binding Proteins AT5G20720 73.047 3.33e-132 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05105 K04078 - gmx:100804915 394.815