Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05104 ATGAAGGCTCCATCCAATGGTTACTTGCCTAATTCTGGAGAAGGGGAAAGGAAGACCATTAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTCGTGGTTTACTTCCCTCAAGGACATAGTGAGCAAGTTGCAGCTTCAATGCAAAAGCAGACTGACTTCATACCGAGTTACCCTAACCTTCCTTCCAAGTTGATTTGCATGCTTCACAATGTTGCCCTACATGCTGATCCTGAAACTGACGAGGTCTATGCACAGATGACCCTTCAACCTGTAAACAAATATGACAAGGAAGCAATACTGGCATCAGATTTCGGTCTCAAACAAAACCGTCAACCTACTGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACAAGTACTCATGGTGGATTTTCTGTTCCTCGTAGAGCAGCCGAGAAAATATTCCCGCCTTTGGATTTTTCAATGCAACCTCCCGCTCAGGAGCTTGTTGCTAAAGATTTGCATGACAATACGTGGGCATTTAGACATATTTATCGGGGACAACCAAAGAGACATTTATTGACTACTGGTTGGAGTGTATTTATCAGCACAAAAAGACTTTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCAGCTGCTTTTAGGTTTGAGGCGTGCTAATAGACAGCAGCCAGCGCTTTCTTCATCAGTAATCTCCAGTGACAGTATGCATATTGGCATTTTAGCTGCTGCAGCTCATGCTGCTGCAAATAACAGTCCATTTACTATATATTACAATCCAAGGGCGAGTCCTTCTGAATTTGTTATTCCGTTGGCCAAGTATAACAAAGCCATGTATACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACCGAGGAGTCGGGAGTGCGTCGATATATGGGTACAGTTACTGGAATTAGTGACTTGGATCCTGTCCGATGGAAAAATTCACAATGGCGTAATCTTCAGATCGGATGGGATGAATCAACAGCTGGTGAACGCCCAAGCAGAGTCTCAATTTGGGACATTGAACCAGTAGTGACTCCTTTCTATATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCTGGAATGCCAGATGACGAGTCTGATGTCGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACTTTGGCATGAAGGACGCCTCGAGTTCAGGGTTCCCTGGTTTGAGTTTAGTGCAGTGGATGCAAATGCAGCAGAATAATCAGTTTTCAGCTGGTCAATCAGGATGTTTCCCATCCATGCTCTCATCTAATACTCTGCATGGTAATCTTAGCACCGACGACCCATCCAAATTACTAAGTTTCCAAGCTCCAGGCCTCTCTGCACCAAGTCTTCAATTTAACAAACCTAATTTACCAAATCAAACCAACCAATTGCATCAGTCCCCAGCATCATGGCCTCAGCAGCAACAACAGTTACAGCAGCAGCAACAACAACAATTACAGCAGCAGCAACAGCAACAGCAACAACAGCTACAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCTGCAGTCATTGTCGCAAATACCAATGAACCAGTTCCAGCAACAGAGGCAACAACAGCTGCCTGAATCACAAAACCTGACTCTGCTACAACAACAAATGTCTCAGCAGCTAGGACAGCAGCCACAGAAGCATCCACAGTCATCTCAACATGCTACTCTGAATAATGGTGTAGTTGCTTCGAACCAGAATACAAATCAGTTTTCACAGCAGCAAACACTAGCTTACACTCAGCTTCAGCAAAAACAATTGCTCCCGGGAAGTATCCCACTCCAACAAAGTATCCAGTCAGCCAGTAAGAATACATTCCCACTGACATCCCTACCACAAGACTCACAATTTCACCAACATATTGACCAACAAGCGAGTCTCTTACAGAGGCAGCAGCAACAAACACAATTACAACAATCTTCACTGCAGGCGTTACAACAAAGCCAGCCACAGTGGGTGCCACCAAACCTTCCAGTGACTCAAATGTCTCAACAAAACACTTCGGACCAACAACTGCAGCTACAGTTTTTGCACAAATTGCAGCAGCAGCAGCAACAGCAACAACAACAGCAGCAACAACAACAACAACAACTTCTTTCGACGTCTAGCCCACTATTGCAATCTCAGCTTCTACAGAAACAAAATACTCACCAACAAAACCAGCAATTACCGCAGATGCCTTTATCCCAACATCATAATCAACAGCTTGGCAATAATGCATTTCCAACGGAGAAGCGGCTCAACAGCAACAATTTGTCTTCCTCATCTCTTATGCAATCACAGCAGTTTTCTGTGAATCAAACCCCGAATACGCACAAGCCACGCACAATTACTAGAGTTCCCTCTACACTTACAGATGGAGAGGCCCCATCATGCTCAACTTCACCATCTACTAATAACTGCCAGACATCTCAACCAAATCTCCTGAAAAGAAATCAACAAGTACAAACTACAATAGGCGGGATCTTGGTAGTGGAGCCTGCCAATAATCTGATGCAGGACCTTCAGAGTAAGTCTGACATGCATGTCAAACAAGAGTTCTCAAATGTAAAAGGATCTGACCAACTAAAGTATAAGGGGGCTACTACTGATCAGCTCGAAGCTTCGTCTGGAACATCTTACTGTCTGGATCCCGGTAATGTCCAGCAGAGTTTGCCATTATCCAACTTCTGCATGGAAAGCGATGTCCAATCGAACCCTCGAAACACTCTACCATTTGAATCTAATTTTGATGGTCTAATGTCTGACACTATGCTTTCTAGGGGTTATGACTCTCAAAAAGATCTTCAAAATCTGTTGGCTAATTATTGTGGTGCTCCAGGAGACATTGAAACCGAGCTGTCCACCGCTGACATCAGCTCACAGTCATTTGGATTACCCGACATGGCTTTTAAGCCTGGTTGCTCAAATGATGTTGGCATCGATGACACTTCTGGGGTTTTGAACAATGGCGTGCGGGCAAACCAAACTCAACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTCGGAAGATGTATTGATGTAACCCGCTACAAGGGATATGATGAACTCCGGTATGATTTGGCACGAATGTTTGGAATTGAAGGGCAACTGGAAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTCGATCATGAGAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAGGAATTTGTAAGCTGTGTTCAGAGTATAAAGATATTATCATCAGCTGAGGTGCAGCAAATGAGCTTGGCTGGGGATTTAGGTGGTAATGTTCCAATCCCAAATCAAGCATCCAGTGGGACAGATAGTGGCAATGCATGGAGAGGACAGTATGATGATAATTCTGCAGCCTCGTTCAATCGGTGA 3444 0.4411 MKAPSNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDFGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDVENAFKRAMPWLGDDFGMKDASSSGFPGLSLVQWMQMQQNNQFSAGQSGCFPSMLSSNTLHGNLSTDDPSKLLSFQAPGLSAPSLQFNKPNLPNQTNQLHQSPASWPQQQQQLQQQQQQQLQQQQQQQQQQLQQQQQQQQQQQQLQSLSQIPMNQFQQQRQQQLPESQNLTLLQQQMSQQLGQQPQKHPQSSQHATLNNGVVASNQNTNQFSQQQTLAYTQLQQKQLLPGSIPLQQSIQSASKNTFPLTSLPQDSQFHQHIDQQASLLQRQQQQTQLQQSSLQALQQSQPQWVPPNLPVTQMSQQNTSDQQLQLQFLHKLQQQQQQQQQQQQQQQQQLLSTSSPLLQSQLLQKQNTHQQNQQLPQMPLSQHHNQQLGNNAFPTEKRLNSNNLSSSSLMQSQQFSVNQTPNTHKPRTITRVPSTLTDGEAPSCSTSPSTNNCQTSQPNLLKRNQQVQTTIGGILVVEPANNLMQDLQSKSDMHVKQEFSNVKGSDQLKYKGATTDQLEASSGTSYCLDPGNVQQSLPLSNFCMESDVQSNPRNTLPFESNFDGLMSDTMLSRGYDSQKDLQNLLANYCGAPGDIETELSTADISSQSFGLPDMAFKPGCSNDVGIDDTSGVLNNGVRANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLAGDLGGNVPIPNQASSGTDSGNAWRGQYDDNSAASFNR 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05104 1147 Gene3D - 124 227 IPR015300 -
Trre15g05104 1147 MobiDBLite consensus disorder prediction 671 691 - -
Trre15g05104 1147 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre15g05104 1147 MobiDBLite consensus disorder prediction 757 830 - -
Trre15g05104 1147 Coils Coil 495 530 - -
Trre15g05104 1147 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Trre15g05104 1147 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Trre15g05104 1147 SUPERFAMILY CAD & PB1 domains 1032 1097 - -
Trre15g05104 1147 FunFam Auxin response factor 124 228 - -
Trre15g05104 1147 Pfam AUX/IAA family 1013 1105 IPR033389 -
Trre15g05104 1147 Gene3D - 289 360 - -
Trre15g05104 1147 SMART B3_2 126 228 IPR003340 GO:0003677
Trre15g05104 1147 MobiDBLite consensus disorder prediction 466 496 - -
Trre15g05104 1147 CDD B3_DNA 125 217 IPR003340 GO:0003677
Trre15g05104 1147 ProSiteProfiles PB1 domain profile. 1019 1103 IPR000270 GO:0005515
Trre15g05104 1147 FunFam Auxin response factor 1014 1108 - -
Trre15g05104 1147 Coils Coil 702 722 - -
Trre15g05104 1147 MobiDBLite consensus disorder prediction 1118 1147 - -
Trre15g05104 1147 FunFam Auxin response factor 289 361 - -
Trre15g05104 1147 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Trre15g05104 1147 Gene3D - 1014 1108 - -
Trre15g05104 1147 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 609 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05104 Trre-Chr15 60784525 60790431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05104 1 487 B3 DNA Binding Superfamily AT1G19220 83.573 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre15g05104 AUX_IAA 2e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05104 K14486 - gmx:100816054 1652.49