Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05093 ATGGACGACGCCGGAGTCTCCAAATTAACTGCTAAGTTGAAGGAAATATTTCAAAAGTGGCAATTAGGTTCTAAAGAATGCAATGATGAACAACATTCTGATGTGAATCATGGTGGCATATCACCAATGATTTCCAAAAGGTTAAACAGTTTAGTGTACTGTGATTCTGATGAAGATAGTTGTTGCAATAGTCCTAAACCACCACATGATGTTCCTAAAGGGTACTTAGCTGTTTATGTTGGACCAGAACTTAGGAGATTCATCATTCCAACAAGCTACCTTAGTCATTCTCTTTTCAAAATGTTGTTGGAAAAAGCTGCTGATGAATTTGGTTTTGATCAGAGTGGTGGACTTACAATTCCATGTGAAATTGAGACCTTTAAATACCTTCTCAACTGCATGGAGAGTACTCAACTTCATCATGATGATGATAATGACACCTCTGCTGGGAACAAAAGAACTTTGGAAGAGGCAATAAACTAA 483 0.3747 MDDAGVSKLTAKLKEIFQKWQLGSKECNDEQHSDVNHGGISPMISKRLNSLVYCDSDEDSCCNSPKPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKMLLEKAADEFGFDQSGGLTIPCEIETFKYLLNCMESTQLHHDDDNDTSAGNKRTLEEAIN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05093 160 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 54 130 IPR003676 GO:0009733
Trre15g05093 160 MobiDBLite consensus disorder prediction 141 160 - -
Trre15g05093 160 Pfam Auxin responsive protein 56 133 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05093 Trre-Chr15 60675270 60676554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05093 1 157 Calmodulin-binding Proteins AT3G43120 59.394 1.09e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05093 K14488 - gmx:100795275 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05093 15 60675270 60676554 Trre15g05093 15 60675270 60676554 ECH
Trre15g05093 15 60675270 60676554 Trre3g02692 3 28528131 28528864 PCT