Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05087 ATGGGAAGAGAAGCACCAAAGCCGCAACAACAACAACAAGGACAAGGAACTGCTTACACTGTTGAGCAGCTCGTTGCATTGAATCCCTACAATCCTGATATTCTTCCAGATCTCGAAAACTCTGTCAATGATCAGGTTTCATCAGAGACATATAGTCTCGAATCAAATCTCTGCCTCCTTCGCCTCTACCAGTTTGAGCCTGAGAAAATGAGTTCTCAGATTGTAGCTCGCATATTGGTTAAGGCTCTCATGGCTATGCCGGCTCCGGACTTCAGCCTGTGTCTCTTTTTGATTCCGGAACGTGTGCAAATGGAGGAGCAGTTCAAGACACTGATTGTTCTGTCTCACTATTTGGAGACTGGAAGGTTTCGTCAGTTCTGGGACGAAGCTGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCTGGATTTGAGCAGGCAATCCAAGGCTATGCAATTCATGTCCTATCCTTGACTTACCAAAAGATTCCCAGAACTGTGCTTGCTGAGGCTATCAACATAGAAGGTTTAGCCTTGGACAAATTCCTTGAACACCAAGTAGCCAACTCTGGTTGGGTTATTGAGAAAAGCCAGGGCAGGGGTCAACTCATTGTCCTTCCCAGGGATGAATTTAATGATCCAATTTTGAAGAAAAACACTGCAGATAGTGTACCATTCGAGCACGTTACAAACCTCTTATCTATTCTCAGTTGA 711 0.4459 MGREAPKPQQQQQGQGTAYTVEQLVALNPYNPDILPDLENSVNDQVSSETYSLESNLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGYAIHVLSLTYQKIPRTVLAEAINIEGLALDKFLEHQVANSGWVIEKSQGRGQLIVLPRDEFNDPILKKNTADSVPFEHVTNLLSILS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05087 236 Gene3D ARM repeat; domain 1 15 129 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
Trre15g05087 236 FunFam Eukaryotic translation initiation factor 3 subunit K 132 235 - -
Trre15g05087 236 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 12 236 IPR009374 GO:0003743|GO:0005737|GO:0005852
Trre15g05087 236 Pfam CSN8/PSMD8/EIF3K family 71 197 IPR033464 -
Trre15g05087 236 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 11 233 IPR009374 GO:0003743|GO:0005737|GO:0005852
Trre15g05087 236 ProSiteProfiles PCI domain profile. 51 210 IPR000717 -
Trre15g05087 236 FunFam Eukaryotic translation initiation factor 3 subunit K 10 129 - -
Trre15g05087 236 Gene3D - 132 235 IPR036388 -
Trre15g05087 236 SUPERFAMILY ARM repeat 17 138 IPR016024 -
Trre15g05087 236 SUPERFAMILY "Winged helix" DNA-binding domain 141 233 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05087 Trre-Chr15 60588209 60590266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05087 1 236 Eukaryotic Initiation Factors Gene Family AT4G33250 72.034 2.33e-125 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05087 K15028 - gmx:100306445 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05087 15 60588209 60590266 Trre15g05087 15 60588209 60590266 ECH