Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05082 ATGCTCATTGGTGATGGCATTGGCGCTACTGTTATCTCCGGTAGTCAGAGTTTTAAGGCCGGTTATAAAACGTTCTACACAGCTACTTTTGCTGTTGATGCTGTAGGATTTATAGCATACAACATTTCATTTGAAAACACTGCGGGACCTAAGAAGGACATGGTTGTGGCACTAAGGCAAGGAAAGCCTGAACAAAATATGAACACTATTACCGCTCAATCACGAAAATACATGAACGAATCAACCGGTTTCTCCTTCCAGTTCTGCAACATCTCAGCAGACATTGGCCTTAAACCAACCACCCAGACATACCTTGGTAGACCTTGGGATGCTTATTCACGGACAATTTTTATGCAGTCCTACATGAGTGCTAAGTTAGGAAGCCGGGTGAAATGGCCCGGGTATCATGTATTGGTTGAGAGTGAGGCTCGAAAGTTCACCGTGGCTGAACTTATTGAAGGAGATCTCTGGTTACCTGCCTCTGATGTTACTTACACGGGTGGTTTATCGGTGTAA 516 0.4438 MLIGDGIGATVISGSQSFKAGYKTFYTATFAVDAVGFIAYNISFENTAGPKKDMVVALRQGKPEQNMNTITAQSRKYMNESTGFSFQFCNISADIGLKPTTQTYLGRPWDAYSRTIFMQSYMSAKLGSRVKWPGYHVLVESEARKFTVAELIEGDLWLPASDVTYTGGLSV 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05082 171 Gene3D - 63 169 IPR012334 -
Trre15g05082 171 Gene3D - 1 62 IPR012334 -
Trre15g05082 171 SUPERFAMILY Pectin lyase-like 1 167 IPR011050 -
Trre15g05082 171 PANTHER PECTINESTERASE 62 159 - -
Trre15g05082 171 Pfam Pectinesterase 1 60 IPR000070 GO:0030599|GO:0042545
Trre15g05082 171 Pfam Pectinesterase 62 124 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05082 Trre-Chr15 60535663 60537056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05082 1 169 Carbohydrate Esterase AT3G43270 39.615 1.56e-49 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05082 K01051 - gmx:100810815 159.458