Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05081 ATGCTCATTGGTGATGGCATTGGCGCTACTGTTATCTCCGGTAGTCAGAGTTTTAAGGCCGGTTATAAAACGTTCTACACAGCTACTTTTGCTGTTGATGCTGTAGGATTTATAGCATACAACATTTCATTTGAAAACACTGCGGGACCTAAGAAGGACATGGTTGTGGCACTAAGGCAAGGAAAGCCTGAACAAAATATGAACACTATTACCGCTCAATCACGAAAATACATGAACGAATCAACCGGTTTCTCCTTCCAGTTCTGCAACATCTCAGCAGACATTGGCCTTAAACCAACCACCCAGACATACCTTGGGTGGACACCATGGAACGAAAGTAAGTTTTATTTGGACACATTGACCTATGGCGAGTATAAAAACTTCGGACCAGGTGCTAAGTTAGGAAGCCGGGTGAAATGGCCCGGGTATCATGTATTGGTTGAGAGTGAGGCTCGAAAGTTCACCGTGGCTGAACTTATTGAAGGAGATCTCTGGTTACCTGCCTCTGATGTTACTTACACGGGTGGTTTATCGGTGTAA 540 0.4444 MLIGDGIGATVISGSQSFKAGYKTFYTATFAVDAVGFIAYNISFENTAGPKKDMVVALRQGKPEQNMNTITAQSRKYMNESTGFSFQFCNISADIGLKPTTQTYLGWTPWNESKFYLDTLTYGEYKNFGPGAKLGSRVKWPGYHVLVESEARKFTVAELIEGDLWLPASDVTYTGGLSV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05081 179 PANTHER PECTINESTERASE 62 167 - -
Trre15g05081 179 SUPERFAMILY Pectin lyase-like 1 175 IPR011050 -
Trre15g05081 179 Pfam Pectinesterase 106 163 IPR000070 GO:0030599|GO:0042545
Trre15g05081 179 Pfam Pectinesterase 1 61 IPR000070 GO:0030599|GO:0042545
Trre15g05081 179 Gene3D - 1 60 IPR012334 -
Trre15g05081 179 Gene3D - 61 177 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05081 Trre-Chr15 60535663 60537056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05081 1 177 Carbohydrate Esterase AT3G43270 40.613 1.16e-49 166