Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05080 ATGTCCTCTGAACAACTTACCATGTCTATCTCAGCCATGCAAAATCCCAAAGGGAAAGATATACGTGGTACTGGAAATCTTAGCTCTGATCTAAGAACATGGCTGAGTGCTGTTCTTGCAAACTCTGACACATGTATTGAAGTATTAGCTGAAGGATTACAAGTTAAGGACATTGCATCAACAGGTCTTAATCGTGCAATGTCTTTAGTGGAGACCCTCTTAGCTCAAGTCATTCCTATCCATGTTGATCATGTCAACAAGGATCATTTTCCATCCTGGATGAGAGAGGATGACAAAATGTTACTGGGAGGAAATAGCTTGAGGGCTCCTGATGCTATTGTGGCGATTGATGGAAGTGGAGATCACCGTAGTTTGACATCCGCGATACAGGCCGCACCTGCTCGTAGCAAGAAAAGATATGTTATACATGTGAAGAGTGGTGTTTATCTTGATGAATATGTTAAGATTACTTCGGATAAATGGAATATTATGCTCATTGGTGATGGCATTGGCGCTACTGTTATCTCCGGTAGTCGGAATGGTGCTGATGGTATACAAACATACAGCACAGCTTCCTTTGCTGTTGATGCTATAGGATTTATAGCATGCAACATATCATTTCGAAACACTGCAGGACCAATGAAGAAACAGGCCGTGGCATTAAGATCGAGTTCCGATCTCTCTATATGTTATAGGTGTGAGATATCCGGCTATCAGGATAGCCTGTATCCTCACACCCATCGTCAATTCTACCGCGAGTGTGTAATTGCTGGATCAGTGGATTTCATCTTCGGAGATGCTCAGGCCGTGTTTCAAAAGTGTGAAATTATAGTCAAACAAGGGACACCTGAACAAAACACAAATACGATTACCGCTCAATCAAGAAAATCCATGAACGAACCAACCGGATTTTCTTTTCAGTTCTGCAACATATCAGCAGACACTGACCTTAAACCAACGACCCAGACATACCTTGGCAGACCTTGGGATGCTTATTCACGGACAATTTTTATGCAGTCCTACATGAGCAACACGATAAGTCCCAAAGGGTGGATACACTGGAACGCTAGTGATTTTTATTTGGACACACTGACCTTTGGTGAGTATAAAAACCTCGGACCAGGTGCGGAGTTAGGAAGCCGGGTGAAATGGCCAGGATTTCATGTACTGAATGAGAGTGAGGCTAAAAATTTCACCGTGGCTGCATTCATTGACGGGGATCTTTGGTTGCCTCCCTCCGGTATTCCTTACACTTCCGGTTTATAG 1266 0.4329 MSSEQLTMSISAMQNPKGKDIRGTGNLSSDLRTWLSAVLANSDTCIEVLAEGLQVKDIASTGLNRAMSLVETLLAQVIPIHVDHVNKDHFPSWMREDDKMLLGGNSLRAPDAIVAIDGSGDHRSLTSAIQAAPARSKKRYVIHVKSGVYLDEYVKITSDKWNIMLIGDGIGATVISGSRNGADGIQTYSTASFAVDAIGFIACNISFRNTAGPMKKQAVALRSSSDLSICYRCEISGYQDSLYPHTHRQFYRECVIAGSVDFIFGDAQAVFQKCEIIVKQGTPEQNTNTITAQSRKSMNEPTGFSFQFCNISADTDLKPTTQTYLGRPWDAYSRTIFMQSYMSNTISPKGWIHWNASDFYLDTLTFGEYKNLGPGAELGSRVKWPGFHVLNESEAKNFTVAAFIDGDLWLPPSGIPYTSGL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05080 421 Gene3D - 106 421 IPR012334 -
Trre15g05080 421 ProSitePatterns Pectinesterase signature 2. 256 265 IPR033131 -
Trre15g05080 421 SUPERFAMILY Pectin lyase-like 108 420 IPR011050 -
Trre15g05080 421 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 78 IPR035513 -
Trre15g05080 421 FunFam Pectinesterase 105 421 - -
Trre15g05080 421 MobiDBLite consensus disorder prediction 1 23 - -
Trre15g05080 421 Pfam Pectinesterase 111 407 IPR000070 GO:0030599|GO:0042545
Trre15g05080 421 PANTHER PECTINESTERASE 3 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05080 Trre-Chr15 60522344 60523966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05080 2 421 Carbohydrate Esterase AT3G43270 54.318 4.15e-162 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05080 K01051 - cave:132165556 481.485