Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05079 ATGGCTCTCTTTCCTACTTTTATATTGATGTTCTTCGTCCTACTAGTCTCATCATCACAGTCAAGTTCTTCTCATTTGATTGGTTCATCATCATGTCTAAAAATTACTCCTAACAAATTTCTGGACTCTGTCAAAGAAGTAAGTATCATTTTACAACAACTGCATTCTATTTTATCACCATTCACCAACAACACATCTGAAGATGGAATTTCAGTTTGCATCGATCTACTCGACATGTCCTCTGAACAACTTACCATGTCTATCTCAGCCATGCAAAATCCCAAAGGGAAAGATATACGTGGTACTGGAAATCTTAGCTCTGATCTAAGAACATGGCTGAGTGCTGTTCTTGCAAACTCTGACACATGTATTGAAGTATTAGCTGAAGGATTACAAGTTAAGGACATTGCATCAACAGGTCTTAATCGTGCAATGTCTTTAGTGGAGACCCTCTTAGCTCAAGTCATTCCTATCCATGTTGATCATGTCAACAAGGATCATTTTCCATCCTGGATGAGAGAGGATGACAAAATGTTACTGGGAGGAAATAGCTTGAGGGCTCCTGATGCTATTGTGGCGATTGATGGAAGTGGAGATCACCGTAGTTTGACATCCGCGATACAGGCCGCACCTGCTCGTAGCAAGAAAAGATATGTTATACATGTGAAGAGTGGTGTTTATCTTGATGAATATGTTAAGATTACTTCGGATAAATGGAATATTATGCTCATTGGTGATGGCATTGGCGCTACTGTTATCTCCGGTAGTCGGAATGGTGCTGATGGTATACAAACATACAGCACAGCTTCCTTTGCTGTTGATGCTATAGGATTTATAGCATGCAACATATCATTTCGAAACACTGCAGGACCAATGAAGAAACAGGCCGTGGCATTAAGATCGAGTTCCGATCTCTCTATATGTTATAGGTGTGAGATATCCGGCTATCAGGATAGCCTGTATCCTCACACCCATCGTCAATTCTACCGCGAGTGTGTAATTGCTGGATCAGTGGATTTCATCTTCGGAGATGCTCAGGCCGTGTTTCAAAAGTGTGAAATTATAGTCAAACAAGGGACACCTGAACAAAACACAAATACGATTACCGCTCAATCAAGAAAATCCATGAACGAACCAACCGGATTTTCTTTTCAGTTCTGCAACATATCAGCAGACACTGACCTTAAACCAACGACCCAGACATACCTTGGCAGACCTTGGGATGCTTATTCACGGACAATTTTTATGCAGTCCTACATGAGCAACACGATAAGTCCCAAAGGGTGGATACACTGGAACGCTAGTGATTTTTATTTGGACACACTGACCTTTGGTGAGTATAAAAACCTCGGACCAGGTGCGGAGTTAGGAAGCCGGGTGAAATGGCCAGGATTTCATGTACTGAATGAGAGTGAGGCTAAAAATTTCACCGTGGCTGCATTCATTGACGGGGATCTTTGGTTGCCTCCCTCCGGTATTCCTTACACTTCCGGTTTATAG 1500 0.42 MALFPTFILMFFVLLVSSSQSSSSHLIGSSSCLKITPNKFLDSVKEVSIILQQLHSILSPFTNNTSEDGISVCIDLLDMSSEQLTMSISAMQNPKGKDIRGTGNLSSDLRTWLSAVLANSDTCIEVLAEGLQVKDIASTGLNRAMSLVETLLAQVIPIHVDHVNKDHFPSWMREDDKMLLGGNSLRAPDAIVAIDGSGDHRSLTSAIQAAPARSKKRYVIHVKSGVYLDEYVKITSDKWNIMLIGDGIGATVISGSRNGADGIQTYSTASFAVDAIGFIACNISFRNTAGPMKKQAVALRSSSDLSICYRCEISGYQDSLYPHTHRQFYRECVIAGSVDFIFGDAQAVFQKCEIIVKQGTPEQNTNTITAQSRKSMNEPTGFSFQFCNISADTDLKPTTQTYLGRPWDAYSRTIFMQSYMSNTISPKGWIHWNASDFYLDTLTFGEYKNLGPGAELGSRVKWPGFHVLNESEAKNFTVAAFIDGDLWLPPSGIPYTSGL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05079 499 ProSitePatterns Pectinesterase signature 2. 334 343 IPR033131 -
Trre15g05079 499 SMART PMEI_2 22 158 IPR006501 GO:0004857
Trre15g05079 499 CDD PMEI-like_4 6 158 - -
Trre15g05079 499 PANTHER PECTINESTERASE 28 489 - -
Trre15g05079 499 Pfam Plant invertase/pectin methylesterase inhibitor 31 133 IPR006501 GO:0004857
Trre15g05079 499 Pfam Pectinesterase 189 485 IPR000070 GO:0030599|GO:0042545
Trre15g05079 499 SUPERFAMILY Pectin lyase-like 186 498 IPR011050 -
Trre15g05079 499 Gene3D Invertase/pectin methylesterase inhibitor family protein 13 156 IPR035513 -
Trre15g05079 499 FunFam Pectinesterase 183 499 - -
Trre15g05079 499 Gene3D - 184 499 IPR012334 -
Trre15g05079 499 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 135 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05079 Trre-Chr15 60522344 60524200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05079 7 499 Carbohydrate Esterase AT3G43270 50.096 1.93e-172 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05079 K01051 - cave:132165556 519.62