Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05071 ATGGCTAATTTAGCTTTTAAACTCTTCCTTCTTCTCTTAACAATCTTCCACTCAAACACTTATGCTTTCAACTTCTCTGATTCTTCCACAAAAACACTACATGCAAAGATATCTTCATTAAAATCCTTCTGCAAAACTACTCCATACCCTGAACTTTGTTTCAATTCATCAAAACTATCAATCTCAATAAACATAAGTCCAAACATCATTAGCATCCTTCTTAACTCTCTTCAAGTAGCAATATCTGAAACAACAAAACTATCTAATCAATTCAACAATGCTAAACAACATTCAAACATCATAGAGAACAAAAGAGGAGTGTTACAAGATTGCAAAGAACTTCAACAATCTACTTTGACTTCCTTAAAAAGATCATTATCTGGAATCAGTTCCTCAAACTCTAGAAAGTTAGTTGATGCAAGAACATATCTCAGTGCAGCACTTACTGACAAGAATACATGTTTAGAAAGCTTAGATTCTGCTTCTGGTACAATGAAGCAAGTTCTAGTGGATTCGGTGATCGACACTTACAAGCATGTTAGTAATTCTCTGTCAATGCTCCCTGAGCCTGAGGAAAGAGCTTCGAAAGGACTTGGTAACCGGCGTTTAATGGATGCTCTAACGTGGTTGTCAAGAAAAGATCATCGCCGGTTCTTGCAAAGTACAAATGATGTAGTTGTGGCTGCAGATGGAAGTGGAAACTTTAGCACTATTAATGAAGCCATTAACTTTGCTCCAAATAACAGCTATGATAGGATAATAATCTATGTGAAAGAAGGAGTGTATGAGGAAAATGTTGAAATCACAAGTGATAAAACCAATATTGTTTTACTTGGTGATGGAAGTGATGTCACTCTCATTACTGGCAATAGAAGTGTTGTTGATGGCTGGACCACTTTCAGATCTGCAACTTTAGCGGTCTCCGGTGAAGGTTTTCTGGCACGCGATATAGCTTTCGAGAACAAGGCAGGACCAGAGAAGCATCAAGCAGTTGCATTAAGAGTGAATGCAGACTTAACAGCTTTTTACAAATGTGGAATGTATGGTTACCAAGACACACTTTATGTTCATTCCTTTAGACAATTCTATAGAGAATGTGACATTTTTGGTACCATAGATTACATATTTGGTAATGCAGCAGTAGTTTTACAAGCATGTAACATTGTTTCAAGAAAGCCATTACCTCATCAATTCACTGTCATCACTGCACAAGCCAGAGATTCCCCTGATGAAGACACTGGTATCTCAATCCAAAATTGTTCAATTTTAGCTACTACTGATTTGTATGACAACTCTAACAACATTAAAAGTTACCTTGGAAGACCTTGGAGGGTTTATTCTAGGACTGTTTACATTGAGTCTTACATTGATGTGTTTATTGATCCAATGGGATGGACAAAGTGGTCTCATGAAGATGACAATGATGAAGGGTTGAATACTTTGTATTATGGTGAGTATGCAAATTATGGACCTGGTTCTGGAACAGATAAAAGAGTCAAATGGTTAGGGTATCATTTGATGGATTTTGATAGTGCAAATAACTTCACTGTTGCTGAGTTCATTATTGGTGATGCTTGGATTGGATCTACTTCATTCCCTTATGATGATTGGATTTGA 1617 0.3673 MANLAFKLFLLLLTIFHSNTYAFNFSDSSTKTLHAKISSLKSFCKTTPYPELCFNSSKLSISINISPNIISILLNSLQVAISETTKLSNQFNNAKQHSNIIENKRGVLQDCKELQQSTLTSLKRSLSGISSSNSRKLVDARTYLSAALTDKNTCLESLDSASGTMKQVLVDSVIDTYKHVSNSLSMLPEPEERASKGLGNRRLMDALTWLSRKDHRRFLQSTNDVVVAADGSGNFSTINEAINFAPNNSYDRIIIYVKEGVYEENVEITSDKTNIVLLGDGSDVTLITGNRSVVDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADLTAFYKCGMYGYQDTLYVHSFRQFYRECDIFGTIDYIFGNAAVVLQACNIVSRKPLPHQFTVITAQARDSPDEDTGISIQNCSILATTDLYDNSNNIKSYLGRPWRVYSRTVYIESYIDVFIDPMGWTKWSHEDDNDEGLNTLYYGEYANYGPGSGTDKRVKWLGYHLMDFDSANNFTVAEFIIGDAWIGSTSFPYDDWI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05071 538 Pfam Pectinesterase 224 524 IPR000070 GO:0030599|GO:0042545
Trre15g05071 538 Gene3D - 219 537 IPR012334 -
Trre15g05071 538 ProSitePatterns Pectinesterase signature 2. 368 377 IPR033131 -
Trre15g05071 538 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 189 IPR035513 -
Trre15g05071 538 CDD PMEI-like_3 42 186 - -
Trre15g05071 538 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 187 IPR035513 -
Trre15g05071 538 NCBIfam pectinesterase inhibitor domain 8 185 IPR006501 GO:0004857
Trre15g05071 538 FunFam Pectinesterase 219 538 - -
Trre15g05071 538 SMART PMEI_2 35 186 IPR006501 GO:0004857
Trre15g05071 538 PANTHER PECTINESTERASE 16 528 - -
Trre15g05071 538 Pfam Plant invertase/pectin methylesterase inhibitor 39 186 IPR006501 GO:0004857
Trre15g05071 538 SUPERFAMILY Pectin lyase-like 219 534 IPR011050 -
Trre15g05071 538 FunFam Pectinesterase 36 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05071 Trre-Chr15 60461024 60463056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05071 25 538 Carbohydrate Esterase AT2G26440 63.842 0.0 671