Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05060 ATGGGTTTCTACACAGAACAATCCATCTCTAATCTAACCATAAGCCAAGCCATATATGAAGCAGCTCTTATCATAGCAGTTCTCAGATGGATCTTCTGCTTAGTTTTCAGAATAATCAACAACAGAAAAACACAACAACAACAACAATACTCTTCTTGTTGTCAAATGTTACCTTTGACAAGTTTTGGTGAAATTAAAGAAAGACATCCAGAAACAACAGAAGATTCAACATGTGCTGTTTGTTTGAACAAACTTAAAATGGAAGATGAAGTTAGAGAATTAATGAACTGTGATCATGTTTTTCATAGAGAATGCATTGATAAATGGTTACAACATGGTTATGAAAATGAAAATCATAATCAAACTTGTCCACTTTGTAGAGCTCCTTTGATTAATAGTTTTTCAGTTTCATCTGAGATTTCAAACTGTAGTGGAATTTCTCCTCCTCAACCTAGTTGGGCTGTTGAAAGACTTCTTTATCTCTTTGGAGATGATCTTTTACCTTGTTAA 510 0.3333 MGFYTEQSISNLTISQAIYEAALIIAVLRWIFCLVFRIINNRKTQQQQQYSSCCQMLPLTSFGEIKERHPETTEDSTCAVCLNKLKMEDEVRELMNCDHVFHRECIDKWLQHGYENENHNQTCPLCRAPLINSFSVSSEISNCSGISPPQPSWAVERLLYLFGDDLLPC 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05060 169 Pfam Ring finger domain 77 127 IPR001841 -
Trre15g05060 169 ProSiteProfiles Zinc finger RING-type profile. 78 127 IPR001841 -
Trre15g05060 169 PANTHER RING ZINC FINGER PROTEIN-RELATED 22 166 - -
Trre15g05060 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 141 IPR013083 -
Trre15g05060 169 SMART ring_2 78 126 IPR001841 -
Trre15g05060 169 SUPERFAMILY RING/U-box 70 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05060 Trre-Chr15 60380696 60381205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05060 1 168 C3H Transcription Factor Family AT3G43430 44.693 3.81e-44 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05060 K16281 - gmx:100306203 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05060 15 60380696 60381205 Trre15g05060 15 60380696 60381205 ECH