Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05059 ATGTCAACAACAGAAGCTCCTCCTCCTTTCCAAGAAGCAGCACGTTGTGTTGTCTGTAGTTGCAGTTTCAACACCTTCAGGAGACGGCATCACTGCCGATCCTGTGGGAGAACATTGTGCAGTGAACATTCATCAGATCAAATGGCTTTACCACAATTTGGCATTTACTCCAATGTACGTGTATGTGCTGATTGTTTCAACAAGCGATCTGGGAAGGGTGTAGGTGTTCCACAAACTTCTTCAGATGGAGTAAACAGCATAACAGATGCAGTTTCTGAGTTAGATATTGATGCTTCAAAAAGAATACCAACTGCAGATAATAATCTTGCATCAGGCGTTAAAGAGTGTAAGTGTGGAATGCCTCTTTGCATTTGTGTAGCTCCTGCCCCTTCCTCTGATCCACTCCCCCAGGAGAAGAAGTCCACCCCAGTTGTTACAGCTCCATCAAATCCTAAACCTAAGAAGACAGATAATGTTTCAAAAAATAAAAGCTCAAGTTCCACAAACAAGTTTAGTTCTACGTTTAACCCTGGATTTGTATCCACTGGTGCCTCAAGCAAACCCCAGATTGATTATGAAGTTAATGGAGAGGGTTTACGAGAAGCAATAAAAAATGGTGATATTGCTGCTGTCAAAAAACTTCTTAATGAGGGTGTAGATGCAAATTACAGAGACAAGCAAGGATTGTCTTTATTGCATTTGGCTGCGGTTTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCGGGGGCAAGTCTGGAGTATAAAAATGCTCAAGGAGAAACGCCTTTAGATTGTGCTCCAGCTACACTGCAATACAAAATGCGGAAGAAGATTGAAGAAAGTGGAGCAACGGACCAAAGGATTTGA 873 0.4158 MSTTEAPPPFQEAARCVVCSCSFNTFRRRHHCRSCGRTLCSEHSSDQMALPQFGIYSNVRVCADCFNKRSGKGVGVPQTSSDGVNSITDAVSELDIDASKRIPTADNNLASGVKECKCGMPLCICVAPAPSSDPLPQEKKSTPVVTAPSNPKPKKTDNVSKNKSSSSTNKFSSTFNPGFVSTGASSKPQIDYEVNGEGLREAIKNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGETPLDCAPATLQYKMRKKIEESGATDQRI 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05059 290 SMART ANK_2a 227 256 IPR002110 GO:0005515
Trre15g05059 290 SMART ANK_2a 194 223 IPR002110 GO:0005515
Trre15g05059 290 ProSiteProfiles Ankyrin repeat profile. 199 226 IPR002110 GO:0005515
Trre15g05059 290 CDD FYVE_scVPS27p_like 9 66 - -
Trre15g05059 290 SUPERFAMILY FYVE/PHD zinc finger 10 70 IPR011011 -
Trre15g05059 290 Pfam Ankyrin repeats (3 copies) 201 268 IPR002110 GO:0005515
Trre15g05059 290 MobiDBLite consensus disorder prediction 135 172 - -
Trre15g05059 290 MobiDBLite consensus disorder prediction 132 172 - -
Trre15g05059 290 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 1 284 - -
Trre15g05059 290 ProSiteProfiles Ankyrin repeat region circular profile. 227 258 - -
Trre15g05059 290 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 10 70 IPR017455 -
Trre15g05059 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 73 IPR013083 -
Trre15g05059 290 ProSiteProfiles Ankyrin repeat profile. 227 259 IPR002110 GO:0005515
Trre15g05059 290 SMART fyve_4 2 71 IPR000306 GO:0046872
Trre15g05059 290 Pfam FYVE zinc finger 11 68 IPR000306 GO:0046872
Trre15g05059 290 Gene3D - 181 289 IPR036770 -
Trre15g05059 290 SUPERFAMILY Ankyrin repeat 199 279 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05059 Trre-Chr15 60373045 60377791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05059 206 285 MAP Kinase Kinase Kinase AT3G58760 36.250 1.16e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05059 - - gmx:100814367 461.455