Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05058 ATGACTAATACTGATACTATCAATAATGTTGACTTAAACTCCATCAGTGATGAAGGCTCTGTCAAGCATTTCTCTGCTAATTGGCCAATGTCAGTGAACCCTTGTACAACTCAATTTGCCATTGTCTATAATGGAAGTATGTGTGTATATGAAGGAATTTCTGCAGAAAAGATGCATGAAATAATGTTTATGGCTTCTGCCAATGCCAAGTCTTCTGAAATGAAGAGTGGAATTTCCTTCACTTCTCTCTTTTCCACTACTAACAACCCTCCTTCTCCTCCTCAAGGAACTTCTGACAATTTGCCTTCTCCTCAATCAGTCTGTTTTCCTGCTGCTGAGAAGACTTCCATTTGCAGGATGCAAGAATTTCCAATAGCACGCAGACAGTCACTTCAAAGTTTTCTTGAGAAGAGAAGAATGAGGGTACGTAGCAAAGCACCTTATACCTCTTCAACATCAAAAGAAGCTAACAACATAGAGAACAACTTCAACCCAACATTGGTGCCACTTGAGGGCAAGTAG 522 0.4004 MTNTDTINNVDLNSISDEGSVKHFSANWPMSVNPCTTQFAIVYNGSMCVYEGISAEKMHEIMFMASANAKSSEMKSGISFTSLFSTTNNPPSPPQGTSDNLPSPQSVCFPAAEKTSICRMQEFPIARRQSLQSFLEKRRMRVRSKAPYTSSTSKEANNIENNFNPTLVPLEGK 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05058 173 ProSiteProfiles Tify domain profile. 32 67 IPR010399 -
Trre15g05058 173 Pfam Jas motif 124 148 IPR018467 -
Trre15g05058 173 MobiDBLite consensus disorder prediction 142 173 - -
Trre15g05058 173 SMART tify_2 32 67 IPR010399 -
Trre15g05058 173 MobiDBLite consensus disorder prediction 145 165 - -
Trre15g05058 173 Pfam tify domain 36 66 IPR010399 -
Trre15g05058 173 MobiDBLite consensus disorder prediction 82 102 - -
Trre15g05058 173 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 33 156 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05058 Trre-Chr15 60368099 60370351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05058 38 157 Tify Gene Family AT5G20900 38.843 4.08e-17 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre15g05058 tify 3.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05058 K13464 - gmx:100306655 149.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05058 15 60368099 60370351 Trre3g02760 3 29726267 29730562 PCT