Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05054 ATGGCGACCGCCAATGTGACATGTCCTGCGCCGATGAAGGCAGTGTCTAATGGGGCTTTCCAACATGAAAATCCGCTCGATTTTGCACTTCCTCTATTGATCGTTCAGATATGTGTAGTTGTCACCTTTACTAGAGTTATTGCATTCCTTTGCAAGCCTCTTAGACAACCTCGAGTCATCGCAGAAATCATCGGAGGAATACTTCTCGGGCCATCTGCTATAGGACGAAGCGAGAAATTCCTAAACACGATTTTTCCAAAGAGAAGCTTAACAGTCCTAGACACATTAGCCAACATTGGTCTTTTGTTCTTCTTATTCCTAGTCGGTCTTGAACTCGACATGCGATCAATCCAAAGAACTGGTAGAAAAGCCTTAGCAATTGCCCTTTGTGGAATCACAGTCCCATTTGTTCTTGGCATAGGAACATCTGTTGTCCTTAGAGCCACAATTTCCAAAGGAGCGGAACCTGTCCCTTTTCTTGTCTTCATGGGAGTTGCTCTCTCGATTACTGCATTTCCTGTCCTCGCTCGAATTCTAGCTGAGCTCAAACTCCTCACCACAGATGTCGGTCGTATAGCTATGTCAGCTGCTGCTGTCAATGATGTTGCAGCTTGGATACTTCTTGCTCTTGCTATAGCCTTATCCGGAGATGATACGTCACCTTTGATTTCTCTTTGGGTTATGCTCTCCGGTACTGCTTTTATTCTCTTTGCTGTATTCGCTATAAGACCGTTGCTTGCATACATGGCTAAGCGTTCCCCCGAGGGTGAACCTGTGAGAGAGCTTTACATTTGTATCACACTGACAATGGTTTTGGCTTGTAGTTTTGTTACTGACACTATTGGAATTCATGCACTATTTGGTGCTTTTGTTGTTGGTATAATTATGCCTAAAGATGGTCCTTTTGCTGGTGTTTTGATTGAAAAGATTGAAGATCTTGTTTCTGGTCTCTTTTTGCCACTCTATTTTGCTTCTAGTGGTTTGAAAACAAATGTGGCTACTATTAGTGGAGGACTTTCTTGGGCACTATTAGCACTAGTTATATTCAATGCTTGCTTTGGAAAGATTATTGGTACTGTTACAGTATCAATGCTATGCAAAATGCCTTTTAGAGAAGCCCTTGCACTTGGATTTATCATGAACACCAAGGGATTGGTTGAGCTCATTGTTCTCAATATCGGAAAGGATCGCAAGGTGCTAAATGACCAATCCTTTGCAATTTGTGTTCTTATGGCATTATTCACAACATTCATCACCACTCCAATAGTGATGGCAGTATACAAACCAGCTAGAAGAGGAGCACCTTACAAGCACAAAACAATCCAACGTAAAGATAACGAATCAGAGCTACGAGTCTTGGCATGTTTCCACAGCACACGCAACATCCCTACACTAATCAACCTTGTAGAATCATCTCGAGGAACACGGAAGCGAGGAAAACTTTGTATCTATGCAATGCATTTGATGGAACTCTCAGAAAGATCTTCAGCTATCACTATGGTTCACAAGGCACGTAACAATGGCATGCCATTTTGGAACACGAAACAAAACGATGAAGATCGAATGGTAATTGCATTCCAAACCTATGGAAAATTGAGTAGTGTCAATGTTCGTCCCATGACAGCAATTTCTGCTCTCAACAACATCCATGAAGATATTTGTACTAGTGCTCATCAAAAGCGCGCCGCGATAATAATCCTTCCGTTCCATAAACATCAACGTATGGACGGAACAATGGAGTCATTAGGACATTCATTCCATCTAATCAATGAGCTTGTGTTGAGTCATGCACCTTGTTCTGTTGGAATTTTGGTTGATCGCGGTCTCGGTGGAACAAGCCAAGTACAGGCTAGTGAAGTTTCATTTAATGTTGTTGTAGTCTATTTTGGAGGGCGCGACGATAACGAAGCACTTGCTTATGGTTTGAGAATAGCAGAACATCCTGGGATTCTGCTAACTGTTGTTAAATTTGTTCCTCCACCTGGAATGACATTATCTTTCGGTGCTAAATTGGTCGGTGTTGCATCCGATAAGAACATAAAAGTAGCGATCGATGACATCGATGGTAGTAGCCATGATGGTAACCAAGATGAACAATTGTGGAATGAATTTCATAATGCAAAGAGTATGAATGAAGAATCAATTAAGTATGAGGAAAAGTTGGTTCAAAGTAAAAATGATATTGAAGAAGCATTGAAGGAATTAAGTAGAAGCAATTTGATATTGGTTGGTAGAATGCCATCAGTTGCACCTTTGGTTGGTAAAAGTGATTCTCCTGAGCTTGGACCTATTGGAAGCTATATGGCTTCTTCTAGTTTCTCCAATTCTGCATCAGTTTTGGTCATTCAACAATATAATTCTACACTTGATATTCATCCTTTGGTTATGGAGGAATTTGATTGTCCTGAAGCACCAGATACACCAAGGTTTAATTAA 2436 0.4105 MATANVTCPAPMKAVSNGAFQHENPLDFALPLLIVQICVVVTFTRVIAFLCKPLRQPRVIAEIIGGILLGPSAIGRSEKFLNTIFPKRSLTVLDTLANIGLLFFLFLVGLELDMRSIQRTGRKALAIALCGITVPFVLGIGTSVVLRATISKGAEPVPFLVFMGVALSITAFPVLARILAELKLLTTDVGRIAMSAAAVNDVAAWILLALAIALSGDDTSPLISLWVMLSGTAFILFAVFAIRPLLAYMAKRSPEGEPVRELYICITLTMVLACSFVTDTIGIHALFGAFVVGIIMPKDGPFAGVLIEKIEDLVSGLFLPLYFASSGLKTNVATISGGLSWALLALVIFNACFGKIIGTVTVSMLCKMPFREALALGFIMNTKGLVELIVLNIGKDRKVLNDQSFAICVLMALFTTFITTPIVMAVYKPARRGAPYKHKTIQRKDNESELRVLACFHSTRNIPTLINLVESSRGTRKRGKLCIYAMHLMELSERSSAITMVHKARNNGMPFWNTKQNDEDRMVIAFQTYGKLSSVNVRPMTAISALNNIHEDICTSAHQKRAAIIILPFHKHQRMDGTMESLGHSFHLINELVLSHAPCSVGILVDRGLGGTSQVQASEVSFNVVVVYFGGRDDNEALAYGLRIAEHPGILLTVVKFVPPPGMTLSFGAKLVGVASDKNIKVAIDDIDGSSHDGNQDEQLWNEFHNAKSMNEESIKYEEKLVQSKNDIEEALKELSRSNLILVGRMPSVAPLVGKSDSPELGPIGSYMASSSFSNSASVLVIQQYNSTLDIHPLVMEEFDCPEAPDTPRFN 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05054 811 Pfam Sodium/hydrogen exchanger family 39 422 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre15g05054 811 PANTHER CATION/H + ANTIPORTER 7 787 - -
Trre15g05054 811 Coils Coil 707 738 - -
Trre15g05054 811 Gene3D - 32 434 IPR038770 -
Trre15g05054 811 FunFam Cation/H(+) antiporter 15 32 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05054 Trre-Chr15 60324478 60327745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05054 1 800 Antiporter Super Family AT3G17630 69.403 0.0 1114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05054 K26731 - gmx:100780382 1287.71