LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g05047	ATGAACCAAACAAACAAAAGCTTTTGGAGCATGAAGCTGCTTTGTTTGTTTGGGTTCATAGGCTTTGTGATTGTGAAAGGGGTGGATGTTTTAGAGAATGGTAATGTGACACTGACAGACATGCAATATGTCAGTGGAAGAGGTTTCAACTATAGACCTTTGATGGTTGGTCTTACTCTTATCAATGGAGCTGCTGCTAAAGGAGCAGTCTGCCTAGATGGATCTTTACCGGCTTACCACTTCCACCGCGGATACAGTTCAGGATCAAACAGTTGGCTAGTACATTTGGAGGGAGGAGGCTGGTGTGGAACTGTCAGAAATTGTATTTATAGTAAGAAAACGCGTCACGGTTCATCGTATTTTATGGAAAAACAAATACCATTTATTGGAATATTGAGCAACAAAGCTGAGGAAAATCCAGATTTTTTCAATTGGAATAGAGTAAAAATTCGTTATTGTGATGGCGCATCATTTAGCGGAGACAGTCAAAATGCGAAAGCAGGGTTGTATTTCAGAGGGCAACGCATATGGCAAGCTGCTATGGAAGATTTAATGTCGAAAGGGATGCGCTATGCCAAACAGGCTCTTCTATCTGGATGTTCCGCAGGTGGATTATCAGCTATACTACATTGCGATGAATTTCGGGAATTATTTTCTAGAAATACAAGAGTAAAGTGCTTTAGTGATGCTGGATTATTCCTTGACTCTATTGATGTATCTGGTCGTCGCAGTTTAAGGAATTTTTTCGGAAGTGTAGTCACCTTACAGGGTGTGCAGAAGAGCCTTCCAAGGAGTTGTACCAATCACCTCAATCCAATTCTGTGCTTTTTCCCTCAGCGTTTAATTGCCAATGTTAGGACACCACTATTTCTTCTAAATGCAGCTTATGATACTTGGCAGATTCAAGCCAGTCTAGCGCCACCTTCTGCTGACTATCGTTGGAATTGGTATGAATGCAGAAAAAATTATGCACGTTGCAGTTCACCGCAGATACAATATCTGCAAGGTTTTCGAAATCAGATGCTTAGAGTTACAAGACGGTTCTCAAAGTCACGCCAAAACGGATTATTCATTAATTCATGTTTCGCTCACTGTCAATCTGAAAGACAGGATACATGGTTTGGCCGCGGTTCTCCTCATATTGGAAATAAAGGTATCGCGGATTCTGTTGGGAATTGGTTTTTTGACCGAGTTGGTGTCCAAGCTGTTGGGTGTGCTTACCCCTGTGACAAAACCTGCCATAATTTGGTTTTCGGCTAA	1260	0.4159	MNQTNKSFWSMKLLCLFGFIGFVIVKGVDVLENGNVTLTDMQYVSGRGFNYRPLMVGLTLINGAAAKGAVCLDGSLPAYHFHRGYSSGSNSWLVHLEGGGWCGTVRNCIYSKKTRHGSSYFMEKQIPFIGILSNKAEENPDFFNWNRVKIRYCDGASFSGDSQNAKAGLYFRGQRIWQAAMEDLMSKGMRYAKQALLSGCSAGGLSAILHCDEFRELFSRNTRVKCFSDAGLFLDSIDVSGRRSLRNFFGSVVTLQGVQKSLPRSCTNHLNPILCFFPQRLIANVRTPLFLLNAAYDTWQIQASLAPPSADYRWNWYECRKNYARCSSPQIQYLQGFRNQMLRVTRRFSKSRQNGLFINSCFAHCQSERQDTWFGRGSPHIGNKGIADSVGNWFFDRVGVQAVGCAYPCDKTCHNLVFG	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g05047	419	Pfam	Pectinacetylesterase	53	397	IPR004963	GO:0016787
	Trre15g05047	419	PANTHER	NOTUM-RELATED	31	415	IPR004963	GO:0016787

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g05047	Trre-Chr15	60272946	60276102	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g05047	22	418	Carbohydrate Esterase	AT1G57590	63.728	0.0	545

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g05047	K19882		-	gmx:100791571	748.043