Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05040 ATGGAAGGCAAAGTTGCACTTCAAAAATTGCTACAAGTTCAGGAAAGGCTATATGATAACAATACACATGCTTCCATTAAAAATACTGTAGGAATTGGATCTAGTTGTCTGAGTTTGAGTCTGAATAATGACTTAGAAGAGATCACTCCTCAGAATCATGAACACCCTATCCCCCAACTCAAATTGGGGTGGCTGGAAAGTAAGGTAGAGGAGGTGAAGAAAGAAAATCAGATTTTAAGATGTATGTTAAATCAAGTAACTCAACAATATACACTTCTTCAAACTCAATTCTTAATAGCCATGCAGCAGCAACAACAATTATCTACATCACCTAATAAAATCAATAAAGAAGAAGCAAAAATATTAAAAGAGGAGGATGGAGCATCTGAATTAGCTTCTTCTTTTGGAAAAAAAGCTAGAGTGTCCATTAGGGCACGATCAGATTTCTCATTGATGAGTGATGGGTGTAGATGGAGAAAGTATGGACAAAAGATATCAAAGGCTAATCCTTACTGTCCCCGGGCCTATTACCGTTGCAATATGGGATTGGGAACAACAACACCATGTCCCGTTCGTAAGCAGGTTCAAAGGTGTTCTGTAGATGAGACTGTATTCATGACAACCTATGAAGGGAATCATAATCATTCACTTCCACCATCAGCAAGGTTAATGGCAAATACAACATCAGCAGCATTAAGCATGTTTCTTTCAGGTTCAACCACTAGTTTACATGGCAGCAACTGTACTCTATCAAATTCAAGCCTCTTCTATTCATCAGCATCATCATGTCCTACTATAACATTGGACTTAACTCAACCCTCTACTAACTTCTTCAAATTTCAAACACCTATTTCTTCAAACCACTACAATTACCAACCCTTTCCTCAACAATCTAATGAGGGATTAAGTTTGTCTTCTAAGATTCCAACCTTTTCCTTGATGGATGGTGTGATTGCAGCTATAGTCAAAGATCCTTCTATTAAGGAAGCATTAGATGCAGCTGTTTCTTCACTCTCTCCTGGAGTAGTATTGCAACAATGA 1041 0.3785 MEGKVALQKLLQVQERLYDNNTHASIKNTVGIGSSCLSLSLNNDLEEITPQNHEHPIPQLKLGWLESKVEEVKKENQILRCMLNQVTQQYTLLQTQFLIAMQQQQQLSTSPNKINKEEAKILKEEDGASELASSFGKKARVSIRARSDFSLMSDGCRWRKYGQKISKANPYCPRAYYRCNMGLGTTTPCPVRKQVQRCSVDETVFMTTYEGNHNHSLPPSARLMANTTSAALSMFLSGSTTSLHGSNCTLSNSSLFYSSASSCPTITLDLTQPSTNFFKFQTPISSNHYNYQPFPQQSNEGLSLSSKIPTFSLMDGVIAAIVKDPSIKEALDAAVSSLSPGVVLQQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05040 346 Coils Coil 69 89 - -
Trre15g05040 346 Pfam WRKY DNA -binding domain 154 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05040 346 ProSiteProfiles WRKY domain profile. 147 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05040 346 SMART WRKY_cls 152 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05040 346 SUPERFAMILY WRKY DNA-binding domain 145 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g05040 346 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 52 338 IPR044810 GO:0003700
Trre15g05040 346 Gene3D WRKY domain 136 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05040 Trre-Chr15 60219869 60222452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05040 111 272 WRKY Transcription Factor Family AT4G04450 52.459 2.95e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre15g05040 WRKY 1.3e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05040 - - psat:127138760 374.4