Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05030 ATGTTGGCTAAGGCTAGTGTGGATGAAGATATAGCCAAAACTGAGATGACAGGGTCAGCAAGTCATCATCCACCAGTTCCTGCAGGTTCTGAAAATTTCCAAGAAATGGTTGACATGCACCAAGATACCAAGAAGAACAAGGTTAAGGATCAAAGAAATAAAACAGTGCCCTTTTACAAGCTTTTCTCATTTGCAGACTCTTGGGATTATTTGTTGATGATTGTTGGGACTACAAGTGCTGTAGGGAATGGAGTCTCTATGCCTTTAATGGCTATAATTATTGGAGACACTCTTGATGCTTTTGGAGCAAATGTCAACACTAAACAAATAGTTCATCAAGTTTCCAAGGTGTCTCTCAAGTTTGCAATTTTAGGTGCATGTGATTTTTTTGCAGTGTTTCTACGGGAGAGACAAGCTGCAAGAATAAGGGCCTTTTACCTCAAAGCGGTTTTAAGGCAAGATATCAGTTTCTTTGACAAGGAAACAAACAGTGGTGAAGTTGTTGGAAGAATGTCAGGTGATACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTGTGTGTCATGTTTATTAGGAGGTTTAGTTGTGGCATTCATCAAGGGTTGGCTTCTAGCCCTTGTCCTTCTATCGTCTATCCCTCTTCTTCTCCTCTCTGGTTCAATAATGAGCTTTGTATTCGCAATGACGGCGTCGCGTGGACAAGCAGCTTATTCTGAAGCAGCAACTATAGTAGAGCGGATCATCGGTTCAATTAGAACAGTTGCTTCATTTACCGGCGAAAAGCAAGCTATAGCTCAGTACAATCAATCCTTAACTAAAGCTTATAGAATTGGAGTGCAAGAAGGATTGGCTATTGGTTTAGGATTCGGTTCGGCTCGTTTATTAGTTTATTTCACTTATGCTTTGACTGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGTTATACTGGAGGTGAAGTCATAAGTGTATTTTTTGCAATTCTAACAGGTTCCTTGTCTCTAGGACAGGCATCTCCATGTTTAACTGCATTTGCAGCTGGACAAGCTGCAGCCTTTACTATGTTTGAAACGATTAGAAGGAGGCCGGAAATTGATGCTTATGATACTACTGGGAGAAAGCTTGATGACATCCGCGGAGACATAGAGCTTAGGAAGGTTTGCTTTAGTTATCCTGCAAGACCAAATGAAATGATATTCAATGCATTTTCTATTTCAATATCAAGTGGCACTACGACGGCTTTGGTAGGGCAAAGTGGAAGTGGTAAATCTACAGTTATTAGTTTGATAGAGAGATTTTATGATCCACAAGGTGGTGAAATCCTCATTGACAGTATCAACCTTAAAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGTCAAGAACCAGTTCTCTTTGCTTGTAGCATTAAAGAGAACATTGGCTATGGTAAGGATGTGGCAACCGATGAAGAAATCAGATATGCAGCCGAACTTGCTAATGCTGCTAACTTCATTGATAAATTTCCCCAAGGACTTGAAACGATGGTCGGAGAGCATGGAGCTCAGCTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGACCCAAGAATTTTACTACTCGATGAAGCAACAAGTGCTCTTGACATGGAATCGGAAAGGGTGGTGCAAGAAACACTAGACAGAATCATGATAAACCGAACAACCATCATCGTAGCTCACCGCCTAAGCACAATAAGGAATGCTGATATCATTGCCGTTATTCACCAAGGGAAAGTAGTAGAAAAAGGTACACATGCTGATCTTACTAAAGATCCTAATGGAGCATATAGTCAACTCATTAGGCTGCAAGAAATTAACAAGGATTCATCAGAACAATATGATGCTAATGACTCAGATAAGCTAGAAAACATTGTAGATTCTGGAAGAGAGTCAAGCCAAAGGTCTCTAAGCCGTGGATCATCTGCGACCAGAAACAGCAGTAACAACTCCTTCAAAGCATCAAACAGCAGTAACAACTCCTTCAAAGCATCAAATTTTATTCCTACCACATTAGTACGAGGATCTGGATTTGCTCCTTCAGCAGAAGCAGCATCATTTAAAAGTAAAACTCAAGATGTCCCATTTCTCCGCCTCGCTTATCTTAACAAGCCTGAAATCCCAGTGTTACTCATAGGGACTCTAGCAGCAGCAGTTACCGGAGCAATGCTGCCTATTCTAGGACTTCTACTCTCCAAGATGATAAATACATTCTTTGAGCCTGCAGACAAACTTCGTAAAGACTCAAAGTTTTGGGCATTAATATTTATTTCCTTTGGTGTGGCTTCCTTCGCTTTCCATCCATTAAGGTCCTACTTCTTTGCGGTAGCTGGTTCGAAGTTGATAAAAAGGATCCGGTTAATGTGTTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATAAAGCTGAGAATTCAAGTGGTTCACTTGGAGCAAGGCTGTCAACTGATGCTGCTTCAATTCGAAGTTTGGTTGGCGATGCACTCGGTTTGCTTGTTCAAGATATTGCTACAGTTATTACCGCCTTGGTAATCTCCTTTGAAGCAAATTGGCAGCTTTCTCTCATCATTATTGTTTTGGTACCTCTAATATTAGTAAATGGACATTTTCAAATCAAGTCCATGCAAGGATTCAACACAGATGCAAAGAAACTATATGAGGAAGCAAGCCAAGTAGCGAACGATGCGGTAGGAAATATCAGAACAGTTTCTGCTTTCTGTGCCGAAGAGAAGGTGATGGAGTTATATCAGAATAAATGTGTAGTACCAGTCCAGACAGGAAAAAGGCAGGGTTTAGTCAGTGGAATTGGTTTTGCCTTCTCAATCTTCTTTCTGTTTTGTGTCTATGCATGCAGTTTTTACGCTGGCGCACAACTTGTTGAGCATGGCAAAACATCAATATCAGAAGTTTTTCAAGTATTTTTCTCTCTCAATATGGCAGCCGTTGCAATATCTCAGTCCGGCTTCATGGCACCAGGAGCCAGTAAAGCAAAATGTTCTGCTGCTTCTATACTTGCTATCCTTGATCAGAAATCAAAAATTGACACCAGCGGTGAATCAGGAATGATACTGGAAGATGTGAACGGAGAGATAGAGTTTCACAGTGTCACTTTCAAGTATCCAACTAGGCCTGATGTTCATATATTCAAAAATCTTTCATTAACCATTCATTCAGGACAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCAGATTCAGGTCAGATTAAACTTGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAACAAATGGGCCTGGTAAGCCAAGAGCCTGTACTTTTCAATGACACCATCAGAGCCAACATTGCTTATGGAAAAGGTGGTAATGCAACTGAGACTGAAATTATAGCTGCGGCAGAACTGGCAAATGCTCATAAGTTCATTAGCAGTTTGCAGCAGGGATATGATACAATAGTAGGGGAGAGAGGAACTCAACTATCTGGAGGACAGAAGCAACGCGTGGCAATTGCGAGAGCCATAGTTAACAGTCCAAGAATATTACTACTAGATGAAGCCACAAGCGCACTTGATGCTGAATCTGAAAAAGTGGTTCAAGATGCACTTGATAGAGTGAGGGTGGATAGAACCACCATTGTGGTGGCTCACAGATTATCTACCATAAAGGGTGCAAATTCAATAGCAGTTGTTAAAAATGGAGTCATTGAAGAAAAAGGAAAGCATGACACATTGCTCAATAAGGGTGGTACTTATGCTTCTTTAGTAGCATTGCATACAAGTAGCACTTCTTCATCATATTAA 3903 0.4056 MLAKASVDEDIAKTEMTGSASHHPPVPAGSENFQEMVDMHQDTKKNKVKDQRNKTVPFYKLFSFADSWDYLLMIVGTTSAVGNGVSMPLMAIIIGDTLDAFGANVNTKQIVHQVSKVSLKFAILGACDFFAVFLRERQAARIRAFYLKAVLRQDISFFDKETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQCVSCLLGGLVVAFIKGWLLALVLLSSIPLLLLSGSIMSFVFAMTASRGQAAYSEAATIVERIIGSIRTVASFTGEKQAIAQYNQSLTKAYRIGVQEGLAIGLGFGSARLLVYFTYALTVWFGGKMVLEKGYTGGEVISVFFAILTGSLSLGQASPCLTAFAAGQAAAFTMFETIRRRPEIDAYDTTGRKLDDIRGDIELRKVCFSYPARPNEMIFNAFSISISSGTTTALVGQSGSGKSTVISLIERFYDPQGGEILIDSINLKEFQLKWIRQKIGLVSQEPVLFACSIKENIGYGKDVATDEEIRYAAELANAANFIDKFPQGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDMESERVVQETLDRIMINRTTIIVAHRLSTIRNADIIAVIHQGKVVEKGTHADLTKDPNGAYSQLIRLQEINKDSSEQYDANDSDKLENIVDSGRESSQRSLSRGSSATRNSSNNSFKASNSSNNSFKASNFIPTTLVRGSGFAPSAEAASFKSKTQDVPFLRLAYLNKPEIPVLLIGTLAAAVTGAMLPILGLLLSKMINTFFEPADKLRKDSKFWALIFISFGVASFAFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDKAENSSGSLGARLSTDAASIRSLVGDALGLLVQDIATVITALVISFEANWQLSLIIIVLVPLILVNGHFQIKSMQGFNTDAKKLYEEASQVANDAVGNIRTVSAFCAEEKVMELYQNKCVVPVQTGKRQGLVSGIGFAFSIFFLFCVYACSFYAGAQLVEHGKTSISEVFQVFFSLNMAAVAISQSGFMAPGASKAKCSAASILAILDQKSKIDTSGESGMILEDVNGEIEFHSVTFKYPTRPDVHIFKNLSLTIHSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATETEIIAAAELANAHKFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDTLLNKGGTYASLVALHTSSTSSSY 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05030 1300 FunFam ABC transporter B family member 1 1044 1293 - -
Trre15g05030 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 626 IPR027417 -
Trre15g05030 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1054 1291 IPR003439 GO:0005524
Trre15g05030 1300 SMART AAA_5 415 587 IPR003593 GO:0016887
Trre15g05030 1300 SMART AAA_5 1081 1275 IPR003593 GO:0016887
Trre15g05030 1300 Gene3D - 1045 1298 IPR027417 -
Trre15g05030 1300 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 733 1019 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05030 1300 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 74 353 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05030 1300 CDD ABC_6TM_Pgp_ABCB1_D1_like 73 349 - -
Trre15g05030 1300 MobiDBLite consensus disorder prediction 651 680 - -
Trre15g05030 1300 CDD ABC_MTABC3_MDL1_MDL2 388 626 - -
Trre15g05030 1300 Gene3D ABC transporter type 1, transmembrane domain 136 984 IPR036640 GO:0005524|GO:0016020
Trre15g05030 1300 FunFam ABC transporter B family member 1 712 1020 - -
Trre15g05030 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 388 624 IPR003439 GO:0005524
Trre15g05030 1300 FunFam ABC transporter B family member 1 378 627 - -
Trre15g05030 1300 Gene3D ABC transporter type 1, transmembrane domain 39 135 IPR036640 GO:0005524|GO:0016020
Trre15g05030 1300 SUPERFAMILY ABC transporter transmembrane region 720 1034 IPR036640 GO:0005524|GO:0016020
Trre15g05030 1300 PANTHER ABC TRANSPORTER B FAMILY 39 628 IPR039421 -
Trre15g05030 1300 CDD ABC_MTABC3_MDL1_MDL2 1054 1289 - -
Trre15g05030 1300 Gene3D - 386 653 IPR027417 -
Trre15g05030 1300 MobiDBLite consensus disorder prediction 648 680 - -
Trre15g05030 1300 Pfam ABC transporter 1073 1222 IPR003439 GO:0005524
Trre15g05030 1300 ProSitePatterns ABC transporters family signature. 527 541 IPR017871 GO:0005524|GO:0016887
Trre15g05030 1300 ProSitePatterns ABC transporters family signature. 1194 1208 IPR017871 GO:0005524|GO:0016887
Trre15g05030 1300 Pfam ABC transporter 407 555 IPR003439 GO:0005524
Trre15g05030 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1044 1291 IPR027417 -
Trre15g05030 1300 CDD ABC_6TM_Pgp_ABCB1_D2_like 722 1037 - -
Trre15g05030 1300 Pfam ABC transporter transmembrane region 732 1004 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05030 1300 Pfam ABC transporter transmembrane region 73 339 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05030 1300 SUPERFAMILY ABC transporter transmembrane region 54 372 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05030 Trre-Chr15 60139922 60145767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05030 54 1292 Calmodulin-binding Proteins AT2G36910 42.378 0.0 975