Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05029 ATGTTGGCTAAGGCTAGTGTGGATGAAGATATAGCCAAAACTGAGATGACAGGGTCAGCAAGTCATCATCCACCAGTTCCTGCAGGTTCTGAAAATTTCCAAGAAATGGTTGACATGCACCAAGATACCAAGAAGAACAAGGTTAAGGATCAAAGAAATAAAACAGTGCCCTTTTACAAGCTTTTCTCATTTGCAGACTCTTGGGATTATTTGTTGATGATTGTTGGGACTACAAGTGCTGTAGGGAATGGAGTCTCTATGCCTTTAATGGCTATAATTATTGGAGACACTCTTGATGCTTTTGGAGCAAATGTCAACACTAAACAAATAGTTCATCAAGTTTCCAAGGTGTCTCTCAAGTTTGCAATTTTAGGTGCATGTGATTTTTTTGCAGTGTTTCTACAGGTGTCTTGCTGGATGGTCACAGGGGAGAGACAAGCTGCAAGAATAAGGGCCTTTTACCTCAAAGCGGTTTTAAGGCAAGATATCAGTTTCTTTGACAAGGAAACAAACAGTGGTGAAGTTGTTGGAAGAATGTCAGGTGATACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTGTGTGTCATGTTTATTAGGAGGTTTAGTTGTGGCATTCATCAAGGGTTGGCTTCTAGCCCTTGTCCTTCTATCGTCTATCCCTCTTCTTCTCCTCTCTGGTTCAATAATGAGCTTTGTATTCGCAATGACGGCGTCGCGTGGACAAGCAGCTTATTCTGAAGCAGCAACTATAGTAGAGCGGATCATCGGTTCAATTAGAACAGTTGCTTCATTTACCGGCGAAAAGCAAGCTATAGCTCAGTACAATCAATCCTTAACTAAAGCTTATAGAATTGGAGTGCAAGAAGGATTGGCTATTGGTTTAGGATTCGGTTCGGCTCGTTTATTAGTTTATTTCACTTATGCTTTGACTGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGTTATACTGGAGGTGAAGTCATAAGTGTATTTTTTGCAATTCTAACAGGTTCCTTGTCTCTAGGACAGGCATCTCCATGTTTAACTGCATTTGCAGCTGGACAAGCTGCAGCCTTTACTATGTTTGAAACGATTAGAAGGAGGCCGGAAATTGATGCTTATGATACTACTGGGAGAAAGCTTGATGACATCCGCGGAGACATAGAGCTTAGGAAGGTTTGCTTTAGTTATCCTGCAAGACCAAATGAAATGATATTCAATGCATTTTCTATTTCAATATCAAGTGGCACTACGACGGCTTTGGTAGGGCAAAGTGGAAGTGGTAAATCTACAGTTATTAGTTTGATAGAGAGATTTTATGATCCACAAGGTGGTGAAATCCTCATTGACAGTATCAACCTTAAAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGTCAAGAACCAGTTCTCTTTGCTTGTAGCATTAAAGAGAACATTGGCTATGGTAAGGATGTGGCAACCGATGAAGAAATCAGATATGCAGCCGAACTTGCTAATGCTGCTAACTTCATTGATAAATTTCCCCAAGGACTTGAAACGATGGTCGGAGAGCATGGAGCTCAGCTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGACCCAAGAATTTTACTACTCGATGAAGCAACAAGTGCTCTTGACATGGAATCGGAAAGGGTGGTGCAAGAAACACTAGACAGAATCATGATAAACCGAACAACCATCATCGTAGCTCACCGCCTAAGCACAATAAGGAATGCTGATATCATTGCCGTTATTCACCAAGGGAAAGTAGTAGAAAAAGGTACACATGCTGATCTTACTAAAGATCCTAATGGAGCATATAGTCAACTCATTAGGCTGCAAGAAATTAACAAGGATTCATCAGAACAATATGATGCTAATGACTCAGATAAGCTAGAAAACATTGTAGATTCTGGAAGAGAGTCAAGCCAAAGGTCTCTAAGCCGTGGATCATCTGCGACCAGAAACAGCAGTAACAACTCCTTCAAAGCATCAAACAGCAGTAACAACTCCTTCAAAGCATCAAATTTTATTCCTACCACATTAGTACGAGGATCTGGATTTGCTCCTTCAGCAGAAGCAGCATCATTTAAAAGTAAAACTCAAGATGTCCCATTTCTCCGCCTCGCTTATCTTAACAAGCCTGAAATCCCAGTGTTACTCATAGGGACTCTAGCAGCAGCAGTTACCGGAGCAATGCTGCCTATTCTAGGACTTCTACTCTCCAAGATGATAAATACATTCTTTGAGCCTGCAGACAAACTTCGTAAAGACTCAAAGTTTTGGGCATTAATATTTATTTCCTTTGGTGTGGCTTCCTTCGCTTTCCATCCATTAAGGTCCTACTTCTTTGCGGTAGCTGGTTCGAAGTTGATAAAAAGGATCCGGTTAATGTGTTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATAAAGCTGAGAATTCAAGTGGTTCACTTGGAGCAAGGCTGTCAACTGATGCTGCTTCAATTCGAAGTTTGGTTGGCGATGCACTCGGTTTGCTTGTTCAAGATATTGCTACAGTTATTACCGCCTTGGTAATCTCCTTTGAAGCAAATTGGCAGCTTTCTCTCATCATTATTGTTTTGGTACCTCTAATATTAGTAAATGGACATTTTCAAATCAAGTCCATGCAAGGATTCAACACAGATGCAAAGAAACTATATGAGGAAGCAAGCCAAGTAGCGAACGATGCGGTAGGAAATATCAGAACAGTTTCTGCTTTCTGTGCCGAAGAGAAGGTGATGGAGTTATATCAGAATAAATGTGTAGTACCAGTCCAGACAGGAAAAAGGCAGGGTTTAGTCAGTGGAATTGGTTTTGCCTTCTCAATCTTCTTTCTGTTTTGTGTCTATGCATGCAGTTTTTACGCTGGCGCACAACTTGTTGAGCATGGCAAAACATCAATATCAGAAGTTTTTCAAGTATTTTTCTCTCTCAATATGGCAGCCGTTGCAATATCTCAGTCCGGCTTCATGGCACCAGGAGCCAGTAAAGCAAAATGTTCTGCTGCTTCTATACTTGCTATCCTTGATCAGAAATCAAAAATTGACACCAGCGGTGAATCAGGAATGATACTGGAAGATGTGAACGGAGAGATAGAGTTTCACAGTGTCACTTTCAAGTATCCAACTAGGCCTGATGTTCATATATTCAAAAATCTTTCATTAACCATTCATTCAGGACAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCAGATTCAGGTCAGATTAAACTTGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAACAAATGGGCCTGGTAAGCCAAGAGCCTGTACTTTTCAATGACACCATCAGAGCCAACATTGCTTATGGAAAAGGTGGTAATGCAACTGAGACTGAAATTATAGCTGCGGCAGAACTGGCAAATGCTCATAAGTTCATTAGCAGTTTGCAGCAGGGATATGATACAATAGTAGGGGAGAGAGGAACTCAACTATCTGGAGGACAGAAGCAACGCGTGGCAATTGCGAGAGCCATAGTTAACAGTCCAAGAATATTACTACTAGATGAAGCCACAAGCGCACTTGATGCTGAATCTGAAAAAGTGGTTCAAGATGCACTTGATAGAGTGAGGGTGGATAGAACCACCATTGTGGTGGCTCACAGATTATCTACCATAAAGGGTGCAAATTCAATAGCAGTTGTTAAAAATGGAGTCATTGAAGAAAAAGGAAAGCATGACACATTGCTCAATAAGGGTGGTACTTATGCTTCTTTAGTAGCATTGCATACAAGTAGCACTTCTTCATCATATTAA 3927 0.4064 MLAKASVDEDIAKTEMTGSASHHPPVPAGSENFQEMVDMHQDTKKNKVKDQRNKTVPFYKLFSFADSWDYLLMIVGTTSAVGNGVSMPLMAIIIGDTLDAFGANVNTKQIVHQVSKVSLKFAILGACDFFAVFLQVSCWMVTGERQAARIRAFYLKAVLRQDISFFDKETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQCVSCLLGGLVVAFIKGWLLALVLLSSIPLLLLSGSIMSFVFAMTASRGQAAYSEAATIVERIIGSIRTVASFTGEKQAIAQYNQSLTKAYRIGVQEGLAIGLGFGSARLLVYFTYALTVWFGGKMVLEKGYTGGEVISVFFAILTGSLSLGQASPCLTAFAAGQAAAFTMFETIRRRPEIDAYDTTGRKLDDIRGDIELRKVCFSYPARPNEMIFNAFSISISSGTTTALVGQSGSGKSTVISLIERFYDPQGGEILIDSINLKEFQLKWIRQKIGLVSQEPVLFACSIKENIGYGKDVATDEEIRYAAELANAANFIDKFPQGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDMESERVVQETLDRIMINRTTIIVAHRLSTIRNADIIAVIHQGKVVEKGTHADLTKDPNGAYSQLIRLQEINKDSSEQYDANDSDKLENIVDSGRESSQRSLSRGSSATRNSSNNSFKASNSSNNSFKASNFIPTTLVRGSGFAPSAEAASFKSKTQDVPFLRLAYLNKPEIPVLLIGTLAAAVTGAMLPILGLLLSKMINTFFEPADKLRKDSKFWALIFISFGVASFAFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDKAENSSGSLGARLSTDAASIRSLVGDALGLLVQDIATVITALVISFEANWQLSLIIIVLVPLILVNGHFQIKSMQGFNTDAKKLYEEASQVANDAVGNIRTVSAFCAEEKVMELYQNKCVVPVQTGKRQGLVSGIGFAFSIFFLFCVYACSFYAGAQLVEHGKTSISEVFQVFFSLNMAAVAISQSGFMAPGASKAKCSAASILAILDQKSKIDTSGESGMILEDVNGEIEFHSVTFKYPTRPDVHIFKNLSLTIHSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATETEIIAAAELANAHKFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDTLLNKGGTYASLVALHTSSTSSSY 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05029 1308 MobiDBLite consensus disorder prediction 659 688 - -
Trre15g05029 1308 Gene3D ABC transporter type 1, transmembrane domain 720 1027 IPR036640 GO:0005524|GO:0016020
Trre15g05029 1308 SUPERFAMILY ABC transporter transmembrane region 728 1042 IPR036640 GO:0005524|GO:0016020
Trre15g05029 1308 ProSitePatterns ABC transporters family signature. 1202 1216 IPR017871 GO:0005524|GO:0016887
Trre15g05029 1308 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 396 632 IPR003439 GO:0005524
Trre15g05029 1308 FunFam ABC transporter B family member 9 60 392 - -
Trre15g05029 1308 Gene3D - 1052 1301 IPR027417 -
Trre15g05029 1308 Gene3D - 386 635 IPR027417 -
Trre15g05029 1308 CDD ABC_MTABC3_MDL1_MDL2 396 634 - -
Trre15g05029 1308 Pfam ABC transporter 1081 1230 IPR003439 GO:0005524
Trre15g05029 1308 ProSitePatterns ABC transporters family signature. 535 549 IPR017871 GO:0005524|GO:0016887
Trre15g05029 1308 CDD ABC_6TM_Pgp_ABCB1_D1_like 73 357 - -
Trre15g05029 1308 Pfam ABC transporter 415 563 IPR003439 GO:0005524
Trre15g05029 1308 Gene3D ABC transporter type 1, transmembrane domain 60 698 IPR036640 GO:0005524|GO:0016020
Trre15g05029 1308 PANTHER ABC TRANSPORTER B FAMILY 39 636 IPR039421 -
Trre15g05029 1308 FunFam ABC transporter B family member 1 1052 1301 - -
Trre15g05029 1308 Pfam ABC transporter transmembrane region 73 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05029 1308 Pfam ABC transporter transmembrane region 740 1012 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05029 1308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 634 IPR027417 -
Trre15g05029 1308 Gene3D ABC transporter type 1, transmembrane domain 1028 1305 IPR036640 GO:0005524|GO:0016020
Trre15g05029 1308 SMART AAA_5 423 595 IPR003593 GO:0016887
Trre15g05029 1308 SMART AAA_5 1089 1283 IPR003593 GO:0016887
Trre15g05029 1308 MobiDBLite consensus disorder prediction 656 688 - -
Trre15g05029 1308 CDD ABC_MTABC3_MDL1_MDL2 1062 1297 - -
Trre15g05029 1308 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 74 361 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05029 1308 FunFam ABC transporter B family member 1 720 1028 - -
Trre15g05029 1308 SUPERFAMILY ABC transporter transmembrane region 54 380 IPR036640 GO:0005524|GO:0016020
Trre15g05029 1308 FunFam ABC transporter B family member 1 386 635 - -
Trre15g05029 1308 CDD ABC_6TM_Pgp_ABCB1_D2_like 730 1045 - -
Trre15g05029 1308 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1062 1299 IPR003439 GO:0005524
Trre15g05029 1308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1052 1299 IPR027417 -
Trre15g05029 1308 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 741 1027 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05029 Trre-Chr15 60139922 60145767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05029 54 1300 Calmodulin-binding Proteins AT2G36910 42.777 0.0 999
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05029 K05658 - gmx:100777713 1952.95