Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05028 ATGTTGGCTAAGGCTAGTTTGGATGAAGATATATCCACAACTGAGATGACAGGGTCAGCAAGTCATCATCCACCGGTTCCTGCAGGTTCTAAAAATGTTCAAGACATGGCTGACATGAACCAGCAGAATTCAAAGAAGAACAAGGTGAAGGATCAAAGCAATAAAACAGTACCCTTTTATAAGCTTTTCTCATTTGCAGACTCATGGGATTATATGCTTATGTTTGTTGGTACTTTAAGTGCTGTTGGGAATGGAATCTCTATGCCTTTAATGACTATAATTATCGGAGATACTCTTGATGCTTTTGGAGGAAATGTTAACACTAAACAAATAGTTCATCAAGTTTCCAAGGTGTCTCTCAAGTTTGCAATCATGGGTGCATGCACTTTTTTTGCAGTGTTTCTACGAGAGATACAGTCTGCAAGAATAAGGGCATTATACCTCAAAGCGATTTTACGGCAAGATATCAGTTTTTTTGATACAGAAACAAACAGTGGTGAAGTTGTTGGAAGAATTTCAGGTGATACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAATATGTGTCATGTTTTTTAGGAGGTTTAGTTGTGGCATTCATCAAGGGCTGGCTTCTAACCCTTATCCTTCTATCGTCTCTCCCTCTTCTTGTCCTCTCTGGTTCATTAATGAGCTTTGCATATGCAATGATGGCTTCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAATTATAGTAGAGCGGATAATCGGTTCAATTAGAACAGTTGCGTCGTTTACCGGAGAAAAACAAGCTATAGCTCAATACAATATATCCTTAACTAAATCTTATAGAATTGGAGTGCAAGAAGGACTGGCTATTGGTTTAGGCCTCGGTACAGTTCGTTTATTTGTTTATTGCACTTGTGCTTTGACCGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGTTATACAGGAGGTGAAGTCATAAGTGTATTTTTTGCAATACTAACAGGTTCCATGTCTCTAGGACAGGCATCTCCATGTTTAACTGCATTTGCTTCTGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGCAATCGATGCTTATGATACTACTGGACGAAAGCTTGATGATATTTGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTGCAAGACCAAATGAAATGATATTCAATGCATTTTCTATTACAATATCAAGTGGCACTACCGCCGCTTTGGTAGGCCAAAGTGGGAGTGGTAAATCGACGGTTATTAGTTTGATAGAGAGATTTTATGATCCACAAGGTGGTGAAATTCTCATTGATAGTATCAACCTTAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGTCAAGAACCGGTTCTCTTTGCTGGTAGCATTAAAGAGAACATTGGCTATGGTAAGGATGCAGCAACCGATGAAGAAATCAGAGCTGCCGCTGAACTTGCTAATGCTGCTAACTTCATCGACAAATTCCCTCATGGACTTGAAACAATGGTCGGTGAGCATGGTGCTCAGCTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTCTACTCCTCGATGAAGCAACAAGCGCACTTGATGCAGAATCTGAAAGATTAGTACAAGAGACACTAGACAGAATTATGATAAACCGAACAACCATCATCATAGCCCACCGCCTTAGCACAATAAGGAATGCTGATAACATTGCCGTTATTCACCAAGGAAGAGTCGTAGAAAAAGGTACATATGCTGAGCTCACTAAAGACCCTGATGGAGCTTATAGTCAACTCATTAGGCTGCAAGAAATTAAAAAGGATTCATCAGAAAAGTATGGTGCTAATGACTCAGATATGCTAGAAAACTTTGTAGATTTTGGAAGAGAGTCAAGCCAAAGATCTTTAAGCCGTGGATCATCAGGGATAGGAAAAAGCCGTGACAACTCATTCCGAATATCAAATTCTATTCCTACCACACTAGTAAAAGGAGCTGAAGTTGTTCCTTCAACATCAGCATCATCATATATAAGTAAAACTCAAGATGTCCCATTTCTCCGCCTCGCTTATCTTAACAAGCCTGAAATCCCAGTATTACTCATAGGGACTCTAGCTGCAGCAGTTATCGGAGCAATACATCCTATTGTGGGATTTCTAACCTCCAAGATGATAAATACATTCTTTGAGCCTGCAGATGAACTTCGTAAAGACTCAAAGTTTTGGTCACTAATATTTGTTTCCCTTAGTGTGGCTTGCTTCACTTTCCATCCATTAAGGTCCTACTTTTTTGCGGTAGCTGGTTCGAAATTGATAAAAAGGATCCGCTTGATGTGCTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATAAAGCTGAGAATTCAAGCGGTGCACTTGGAGCAAGGCTGTCAACTGATGCTGCTTCAATTCGAACGTTGGTTGGTGATACACTTGGTTTGCTTGTTCAAGATATTTCTACAGTAATTACAGCCTTGGTAATTTCCTTTGAGGCGAATTGGCAGCTTTCTCTTGTCATTATTGTTTTGCTACCGCTACTATTTGTAAATGGACATTTTCAAATTAAGTCCATGCAAGGATTCAACACAGATGCAAAGAAACTATTTGAGGAAGCAAGTCAAGTAGCGAAGGATGCAGTAGGGAATATCAGAACAGTTTCTGCTTTCTGTGCCGAAGAGAAGGTGATGGAGTTATATCAGAAGAAATGTGTAGTACCAGTCCAGACCGGAAAAAGGCAGGGTTTAGTTAGTGGAATTGGTTTTGGCATATCAAACTTCTTTTTGTTTTGTGTCTATGCATGCAGTTTTTATGCCGGCGCCCAACTTGTTGAGAAGGGCAAAACATCAATATCAGAAGTTTTTCAAGTATTTTTCTCTCTCACAATGGCAGCTGTCGCAATAGCTCAATCCGGCTTCACGGCACCAGGAGCTAGTAAAGCAAAAAGTTCTGCTGCTTCTATATTTGCTATTCTTGATCAGAAATCAACAATAGACACCAGTGATGAATCAGGAATGACACTAGAAGATGTGAAAGGAGAGATAGAGTTTCACAATGTTGCTTTCAAGTATCCAACTAGACCCGATGTTCATATATTCAAAAAGCTTTCCTTAACCATTCATTCAGGACAGACTGTTGCATTGGTTGGAGAAAGTGGAAGCGGAAAATCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCAGATTCAGGTCAGATTAAACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAACAAATGGGCCTGGTGAGCCAAGAGCCTGTGCTGTTCAATGACACCATCAGAGCCAACATTGCTTATGGAAAAGGTGGTAATGCAACTGAGGCTGAAATTATAGCTGCGGCAGAACTAGCAAATGCTCATAAGTTCATTAGCAGTTTGCAGCAGGGGTATGATACAATAGTAGGGGAGAGAGGGACTCAACTATCTGGAGGACAAAAGCAACGTGTGGCAATTGCAAGAGCCATAGTTAACAGTCCAAGAATATTACTACTAGATGAAGCCACAAGCGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAAGATGCACTTGATAGAGTGAAGATGGACAGAACCACCATTGTGGTGGCTCATAGATTATCTACCATAAAGGGTGCAAATTCAATTGCAGTTGTTAAAAATGGAGTCATTGAAGAAAAAGGAAAGCATGACACATTGCTCAACAAGGGTGGTACTTATGCTTCTTTAGTAGCATTGCATACAAGTAGCACTTCTTCATCTTATTAA 3876 0.4009 MLAKASLDEDISTTEMTGSASHHPPVPAGSKNVQDMADMNQQNSKKNKVKDQSNKTVPFYKLFSFADSWDYMLMFVGTLSAVGNGISMPLMTIIIGDTLDAFGGNVNTKQIVHQVSKVSLKFAIMGACTFFAVFLREIQSARIRALYLKAILRQDISFFDTETNSGEVVGRISGDTVLIQEAMGEKVGKFIQYVSCFLGGLVVAFIKGWLLTLILLSSLPLLVLSGSLMSFAYAMMASRGQAAYSEAAIIVERIIGSIRTVASFTGEKQAIAQYNISLTKSYRIGVQEGLAIGLGLGTVRLFVYCTCALTVWFGGKMVLEKGYTGGEVISVFFAILTGSMSLGQASPCLTAFASGQAAAFKMFETIKRKPAIDAYDTTGRKLDDICGDIELREVCFSYPARPNEMIFNAFSITISSGTTAALVGQSGSGKSTVISLIERFYDPQGGEILIDSINLREFQLKWIRQKIGLVSQEPVLFAGSIKENIGYGKDAATDEEIRAAAELANAANFIDKFPHGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERLVQETLDRIMINRTTIIIAHRLSTIRNADNIAVIHQGRVVEKGTYAELTKDPDGAYSQLIRLQEIKKDSSEKYGANDSDMLENFVDFGRESSQRSLSRGSSGIGKSRDNSFRISNSIPTTLVKGAEVVPSTSASSYISKTQDVPFLRLAYLNKPEIPVLLIGTLAAAVIGAIHPIVGFLTSKMINTFFEPADELRKDSKFWSLIFVSLSVACFTFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDKAENSSGALGARLSTDAASIRTLVGDTLGLLVQDISTVITALVISFEANWQLSLVIIVLLPLLFVNGHFQIKSMQGFNTDAKKLFEEASQVAKDAVGNIRTVSAFCAEEKVMELYQKKCVVPVQTGKRQGLVSGIGFGISNFFLFCVYACSFYAGAQLVEKGKTSISEVFQVFFSLTMAAVAIAQSGFTAPGASKAKSSAASIFAILDQKSTIDTSDESGMTLEDVKGEIEFHNVAFKYPTRPDVHIFKKLSLTIHSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATEAEIIAAAELANAHKFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKVVQDALDRVKMDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDTLLNKGGTYASLVALHTSSTSSSY 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05028 1291 Gene3D - 387 654 IPR027417 -
Trre15g05028 1291 Gene3D - 1035 1284 IPR027417 -
Trre15g05028 1291 ProSitePatterns ABC transporters family signature. 1185 1199 IPR017871 GO:0005524|GO:0016887
Trre15g05028 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 724 1010 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05028 1291 CDD ABC_6TM_Pgp_ABCB1_D2_like 713 1028 - -
Trre15g05028 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1045 1282 IPR003439 GO:0005524
Trre15g05028 1291 Gene3D ABC transporter type 1, transmembrane domain 1009 1288 IPR036640 GO:0005524|GO:0016020
Trre15g05028 1291 Pfam ABC transporter 408 556 IPR003439 GO:0005524
Trre15g05028 1291 MobiDBLite consensus disorder prediction 1 33 - -
Trre15g05028 1291 PANTHER ABC TRANSPORTER B FAMILY 39 630 IPR039421 -
Trre15g05028 1291 FunFam ABC transporter B family member 1 1035 1284 - -
Trre15g05028 1291 Pfam ABC transporter transmembrane region 74 340 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05028 1291 Pfam ABC transporter transmembrane region 723 995 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05028 1291 Gene3D ABC transporter type 1, transmembrane domain 39 137 IPR036640 GO:0005524|GO:0016020
Trre15g05028 1291 SUPERFAMILY ABC transporter transmembrane region 711 1025 IPR036640 GO:0005524|GO:0016020
Trre15g05028 1291 ProSitePatterns ABC transporters family signature. 528 542 IPR017871 GO:0005524|GO:0016887
Trre15g05028 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 389 625 IPR003439 GO:0005524
Trre15g05028 1291 CDD ABC_MTABC3_MDL1_MDL2 389 627 - -
Trre15g05028 1291 Gene3D ABC transporter type 1, transmembrane domain 138 975 IPR036640 GO:0005524|GO:0016020
Trre15g05028 1291 CDD ABC_MTABC3_MDL1_MDL2 1045 1280 - -
Trre15g05028 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1034 1282 IPR027417 -
Trre15g05028 1291 FunFam Uncharacterized protein 1011 1035 - -
Trre15g05028 1291 Pfam ABC transporter 1064 1213 IPR003439 GO:0005524
Trre15g05028 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 75 354 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05028 1291 CDD ABC_6TM_Pgp_ABCB1_D1_like 74 362 - -
Trre15g05028 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 627 IPR027417 -
Trre15g05028 1291 SUPERFAMILY ABC transporter transmembrane region 61 373 IPR036640 GO:0005524|GO:0016020
Trre15g05028 1291 SMART AAA_5 1072 1266 IPR003593 GO:0016887
Trre15g05028 1291 SMART AAA_5 416 602 IPR003593 GO:0016887
Trre15g05028 1291 FunFam ABC transporter B family member 1 379 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05028 Trre-Chr15 60131563 60137209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05028 35 628 Calmodulin-binding Proteins AT2G36910 35.526 1.37e-103 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05028 K05658 - gmx:100777713 1924.06