Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g05027 | ATGTTGGCTAAGGCTAGTTTGGATGAAGATATATCCACAACTGAGATGACAGGGTCAGCAAGTCATCATCCACCGGTTCCTGCAGGTTCTAAAAATGTTCAAGACATGGCTGACATGAACCAGCAGAATTCAAAGAAGAACAAGGTGAAGGATCAAAGCAATAAAACAGTACCCTTTTATAAGCTTTTCTCATTTGCAGACTCATGGGATTATATGCTTATGTTTGTTGGTACTTTAAGTGCTGTTGGGAATGGAATCTCTATGCCTTTAATGACTATAATTATCGGAGATACTCTTGATGCTTTTGGAGGAAATGTTAACACTAAACAAATAGTTCATCAAGTTTCCAAGGTGTCTCTCAAGTTTGCAATCATGGGTGCATGCACTTTTTTTGCAGTGTTTCTACAGGTGTCTTGCTGGATGATCACAGGAGAGATACAGTCTGCAAGAATAAGGGCATTATACCTCAAAGCGATTTTACGGCAAGATATCAGTTTTTTTGATACAGAAACAAACAGTGGTGAAGTTGTTGGAAGAATTTCAGGTGATACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAATATGTGTCATGTTTTTTAGGAGGTTTAGTTGTGGCATTCATCAAGGGCTGGCTTCTAACCCTTATCCTTCTATCGTCTCTCCCTCTTCTTGTCCTCTCTGGTTCATTAATGAGCTTTGCATATGCAATGATGGCTTCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAATTATAGTAGAGCGGATAATCGGTTCAATTAGAACAGTTGCGTCGTTTACCGGAGAAAAACAAGCTATAGCTCAATACAATATATCCTTAACTAAATCTTATAGAATTGGAGTGCAAGAAGGACTGGCTATTGGTTTAGGCCTCGGTACAGTTCGTTTATTTGTTTATTGCACTTGTGCTTTGACCGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGTTATACAGGAGGTGAAGTCATAAGTGTATTTTTTGCAATACTAACAGGTTCCATGTCTCTAGGACAGGCATCTCCATGTTTAACTGCATTTGCTTCTGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGCAATCGATGCTTATGATACTACTGGACGAAAGCTTGATGATATTTGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTGCAAGACCAAATGAAATGATATTCAATGCATTTTCTATTACAATATCAAGTGGCACTACCGCCGCTTTGGTAGGCCAAAGTGGGAGTGGTAAATCGACGGTTATTAGTTTGATAGAGAGATTTTATGATCCACAAGGTGGTGAAATTCTCATTGATAGTATCAACCTTAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGTCAAGAACCGGTTCTCTTTGCTGGTAGCATTAAAGAGAACATTGGCTATGGTAAGGATGCAGCAACCGATGAAGAAATCAGAGCTGCCGCTGAACTTGCTAATGCTGCTAACTTCATCGACAAATTCCCTCATGGACTTGAAACAATGGTCGGTGAGCATGGTGCTCAGCTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTCTACTCCTCGATGAAGCAACAAGCGCACTTGATGCAGAATCTGAAAGATTAGTACAAGAGACACTAGACAGAATTATGATAAACCGAACAACCATCATCATAGCCCACCGCCTTAGCACAATAAGGAATGCTGATAACATTGCCGTTATTCACCAAGGAAGAGTCGTAGAAAAAGGTACATATGCTGAGCTCACTAAAGACCCTGATGGAGCTTATAGTCAACTCATTAGGCTGCAAGAAATTAAAAAGGATTCATCAGAAAAGTATGGTGCTAATGACTCAGATATGCTAGAAAACTTTGTAGATTTTGGAAGAGAGTCAAGCCAAAGATCTTTAAGCCGTGGATCATCAGGGATAGGAAAAAGCCGTGACAACTCATTCCGAATATCAAATTCTATTCCTACCACACTAGTAAAAGGAGCTGAAGTTGTTCCTTCAACATCAGCATCATCATATATAAGTAAAACTCAAGATGTCCCATTTCTCCGCCTCGCTTATCTTAACAAGCCTGAAATCCCAGTATTACTCATAGGGACTCTAGCTGCAGCAGTTATCGGAGCAATACATCCTATTGTGGGATTTCTAACCTCCAAGATGATAAATACATTCTTTGAGCCTGCAGATGAACTTCGTAAAGACTCAAAGTTTTGGTCACTAATATTTGTTTCCCTTAGTGTGGCTTGCTTCACTTTCCATCCATTAAGGTCCTACTTTTTTGCGGTAGCTGGTTCGAAATTGATAAAAAGGATCCGCTTGATGTGCTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATAAAGCTGAGAATTCAAGCGGTGCACTTGGAGCAAGGCTGTCAACTGATGCTGCTTCAATTCGAACGTTGGTTGGTGATACACTTGGTTTGCTTGTTCAAGATATTTCTACAGTAATTACAGCCTTGGTAATTTCCTTTGAGGCGAATTGGCAGCTTTCTCTTGTCATTATTGTTTTGCTACCGCTACTATTTGTAAATGGACATTTTCAAATTAAGTCCATGCAAGGATTCAACACAGATGCAAAGAAACTATTTGAGGAAGCAAGTCAAGTAGCGAAGGATGCAGTAGGGAATATCAGAACAGTTTCTGCTTTCTGTGCCGAAGAGAAGGTGATGGAGTTATATCAGAAGAAATGTGTAGTACCAGTCCAGACCGGAAAAAGGCAGGGTTTAGTTAGTGGAATTGGTTTTGGCATATCAAACTTCTTTTTGTTTTGTGTCTATGCATGCAGTTTTTATGCCGGCGCCCAACTTGTTGAGAAGGGCAAAACATCAATATCAGAAGTTTTTCAAGTATTTTTCTCTCTCACAATGGCAGCTGTCGCAATAGCTCAATCCGGCTTCACGGCACCAGGAGCTAGTAAAGCAAAAAGTTCTGCTGCTTCTATATTTGCTATTCTTGATCAGAAATCAACAATAGACACCAGTGATGAATCAGGAATGACACTAGAAGATGTGAAAGGAGAGATAGAGTTTCACAATGTTGCTTTCAAGTATCCAACTAGACCCGATGTTCATATATTCAAAAAGCTTTCCTTAACCATTCATTCAGGACAGACTGTTGCATTGGTTGGAGAAAGTGGAAGCGGAAAATCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCAGATTCAGGTCAGATTAAACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAACAAATGGGCCTGGTGAGCCAAGAGCCTGTGCTGTTCAATGACACCATCAGAGCCAACATTGCTTATGGAAAAGGTGGTAATGCAACTGAGGCTGAAATTATAGCTGCGGCAGAACTAGCAAATGCTCATAAGTTCATTAGCAGTTTGCAGCAGGGGTATGATACAATAGTAGGGGAGAGAGGGACTCAACTATCTGGAGGACAAAAGCAACGTGTGGCAATTGCAAGAGCCATAGTTAACAGTCCAAGAATATTACTACTAGATGAAGCCACAAGCGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAAGATGCACTTGATAGAGTGAAGATGGACAGAACCACCATTGTGGTGGCTCATAGATTATCTACCATAAAGGGTGCAAATTCAATTGCAGTTGTTAAAAATGGAGTCATTGAAGAAAAAGGAAAGCATGACACATTGCTCAACAAGGGTGGTACTTATGCTTCTTTAGTAGCATTGCATACAAGTAGCACTTCTTCATCTTATTAA | 3900 | 0.4015 | MLAKASLDEDISTTEMTGSASHHPPVPAGSKNVQDMADMNQQNSKKNKVKDQSNKTVPFYKLFSFADSWDYMLMFVGTLSAVGNGISMPLMTIIIGDTLDAFGGNVNTKQIVHQVSKVSLKFAIMGACTFFAVFLQVSCWMITGEIQSARIRALYLKAILRQDISFFDTETNSGEVVGRISGDTVLIQEAMGEKVGKFIQYVSCFLGGLVVAFIKGWLLTLILLSSLPLLVLSGSLMSFAYAMMASRGQAAYSEAAIIVERIIGSIRTVASFTGEKQAIAQYNISLTKSYRIGVQEGLAIGLGLGTVRLFVYCTCALTVWFGGKMVLEKGYTGGEVISVFFAILTGSMSLGQASPCLTAFASGQAAAFKMFETIKRKPAIDAYDTTGRKLDDICGDIELREVCFSYPARPNEMIFNAFSITISSGTTAALVGQSGSGKSTVISLIERFYDPQGGEILIDSINLREFQLKWIRQKIGLVSQEPVLFAGSIKENIGYGKDAATDEEIRAAAELANAANFIDKFPHGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERLVQETLDRIMINRTTIIIAHRLSTIRNADNIAVIHQGRVVEKGTYAELTKDPDGAYSQLIRLQEIKKDSSEKYGANDSDMLENFVDFGRESSQRSLSRGSSGIGKSRDNSFRISNSIPTTLVKGAEVVPSTSASSYISKTQDVPFLRLAYLNKPEIPVLLIGTLAAAVIGAIHPIVGFLTSKMINTFFEPADELRKDSKFWSLIFVSLSVACFTFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDKAENSSGALGARLSTDAASIRTLVGDTLGLLVQDISTVITALVISFEANWQLSLVIIVLLPLLFVNGHFQIKSMQGFNTDAKKLFEEASQVAKDAVGNIRTVSAFCAEEKVMELYQKKCVVPVQTGKRQGLVSGIGFGISNFFLFCVYACSFYAGAQLVEKGKTSISEVFQVFFSLTMAAVAIAQSGFTAPGASKAKSSAASIFAILDQKSTIDTSDESGMTLEDVKGEIEFHNVAFKYPTRPDVHIFKKLSLTIHSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATEAEIIAAAELANAHKFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKVVQDALDRVKMDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDTLLNKGGTYASLVALHTSSTSSSY | 1299 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g05027 | 1299 | FunFam | ABC transporter B family member 9 | 61 | 393 | - | - | |
Trre15g05027 | 1299 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1053 | 1290 | IPR003439 | GO:0005524 | |
Trre15g05027 | 1299 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 390 | 635 | IPR027417 | - | |
Trre15g05027 | 1299 | FunFam | ABC transporter B family member 1 | 711 | 1016 | - | - | |
Trre15g05027 | 1299 | SUPERFAMILY | ABC transporter transmembrane region | 719 | 1033 | IPR036640 | GO:0005524|GO:0016020 | |
Trre15g05027 | 1299 | ProSitePatterns | ABC transporters family signature. | 536 | 550 | IPR017871 | GO:0005524|GO:0016887 | |
Trre15g05027 | 1299 | SUPERFAMILY | ABC transporter transmembrane region | 61 | 381 | IPR036640 | GO:0005524|GO:0016020 | |
Trre15g05027 | 1299 | FunFam | ABC transporter B family member 1 | 387 | 636 | - | - | |
Trre15g05027 | 1299 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 75 | 362 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre15g05027 | 1299 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 721 | 1036 | - | - | |
Trre15g05027 | 1299 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Trre15g05027 | 1299 | SMART | AAA_5 | 1080 | 1274 | IPR003593 | GO:0016887 | |
Trre15g05027 | 1299 | SMART | AAA_5 | 424 | 610 | IPR003593 | GO:0016887 | |
Trre15g05027 | 1299 | Gene3D | ABC transporter type 1, transmembrane domain | 680 | 906 | IPR036640 | GO:0005524|GO:0016020 | |
Trre15g05027 | 1299 | Gene3D | ABC transporter type 1, transmembrane domain | 948 | 1050 | IPR036640 | GO:0005524|GO:0016020 | |
Trre15g05027 | 1299 | PANTHER | ABC TRANSPORTER B FAMILY | 39 | 638 | IPR039421 | - | |
Trre15g05027 | 1299 | Pfam | ABC transporter | 416 | 564 | IPR003439 | GO:0005524 | |
Trre15g05027 | 1299 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 732 | 1018 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre15g05027 | 1299 | ProSitePatterns | ABC transporters family signature. | 1193 | 1207 | IPR017871 | GO:0005524|GO:0016887 | |
Trre15g05027 | 1299 | FunFam | Uncharacterized protein | 1017 | 1043 | - | - | |
Trre15g05027 | 1299 | Gene3D | - | 1051 | 1294 | IPR027417 | - | |
Trre15g05027 | 1299 | CDD | ABC_MTABC3_MDL1_MDL2 | 397 | 635 | - | - | |
Trre15g05027 | 1299 | CDD | ABC_MTABC3_MDL1_MDL2 | 1053 | 1288 | - | - | |
Trre15g05027 | 1299 | FunFam | ABC transporter B family member 1 | 1043 | 1292 | - | - | |
Trre15g05027 | 1299 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1042 | 1290 | IPR027417 | - | |
Trre15g05027 | 1299 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 74 | 370 | - | - | |
Trre15g05027 | 1299 | Gene3D | - | 387 | 636 | IPR027417 | - | |
Trre15g05027 | 1299 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 397 | 633 | IPR003439 | GO:0005524 | |
Trre15g05027 | 1299 | Pfam | ABC transporter | 1072 | 1221 | IPR003439 | GO:0005524 | |
Trre15g05027 | 1299 | Pfam | ABC transporter transmembrane region | 731 | 1003 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre15g05027 | 1299 | Pfam | ABC transporter transmembrane region | 74 | 348 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre15g05027 | 1299 | Gene3D | ABC transporter type 1, transmembrane domain | 61 | 644 | IPR036640 | GO:0005524|GO:0016020 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g05027 | Trre-Chr15 | 60131563 | 60137209 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g05027 | 35 | 636 | Calmodulin-binding Proteins | AT2G36910 | 36.513 | 1.15e-108 | 371 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g05027 | K05658 | - | gmx:100777713 | 1948.71 |