Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05025 ATGTTGGCTAAGGCTAGTTTGGATGAAGATATAGCCACAACTGAGATGACAGGGTCAGCAAGTCATCATCCACCGGTTCCTGCAGGTTCTGAAAATGTTCAAGACATGGCTGACATGAACCAGAAGAATTCAAAGAAGAACAAGGTGAAGGATCAAAGCAATAAAACAGTACCCTTTTATAAGCTTTTCTCATTTGCAGACTCTTGGGATTATATGCTTATGTTTGTTGGTACTTTAAGTGCTGTTGGGAATGGAATCTCTATGCCTTTAATGACTATAATTATCGGAGATACTCTTGATGCTTTTGGAGGAAATGTTAACACTAAACAAATAGTTCATCAAGTTTCCAAGGTGTCTCTCAAGTTTGCAATCATGGGTGCATGCACTTTTTTTGCAGTGTTTCTACAGGTGTCTTGCTGGATGATCACAGGAGAGATACAGTCTGCAAGAATAAGGGCATTATACCTCAAAGCGATTTTACGGCAAGATATCAGTTTTTTTGATTCAGAAACAAACAGAGGTGAAGTTGTTGGAAGAATGTCAGGTGATACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAATATGTGTCATGTTTTTTAGGAGGTTTAGTTGTGGCATTCATCAAGGGCTGGCTTCTAACCCTTATCCTTCTATCGTCTCTCCCTCTTCTTGTCCTCTCTGGTTCATTAATGAGCTTTGCGTATGCAATGATGGCTTCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAATTATAGTAGAGCGGATAATCGGTTCAATTAGAACAGTTGCGTCGTTTACCGGAGAAAAACAAGCTATAGCTCAATACAATATATCCTTAACTAAATCTTATAGAATTGGAGTGCAAGAAGGACTGACTATTGGTTTAGGCCTCGGTACAGTTCGTTTATTTGTTTATTGCACTTATGCTTTGACCGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGTTATACAGGAGGTGAAGTCATAAGTGTATTTTTTGCAATACTAACAGGTTCCATGTCTCTAGGACAGGCATCTCCATGTTTAACTGCATTTGCTGCTGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATCAAAAGGAAGCCAGCAATCGATGCTTATGATACTACTGGACGAAAGCTTGATGATATTCGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTGCAAGACCAAATGAATTGATATTCAATGCATTTTCTATTTCAATATCAAGTGGCACTACTGCGGCTTTGGTAGGGAAAAGTGGGAGTGGGAAATCGACGGTTATTAGTTTGATAGAGAGATTTTATGATCCACAAGGTGGTGAAATTCTCATTGACAGTATCAACCTCAGGGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGTCAAGAACCGGTTCTCTTTGCTGGTACCATTAAAGAGAACATTGGCTATGGTAAGGATGCGGCAACCGATGACGAAATCAGAGCTGCAGCCGAACTTGCTAATGCTGCTAACTTCATCAATAAATTCTCTCATGGACTTGAAACAATGGTCGGGGAGCATGGTGCTCAGCTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTCTACTCCTCGATGAAGCAACAAGCGCACTTGATGCAGAATCTGAAAGATTAGTACAAGAGACACTAGACAGAATTATGATAAACCGAACAACCATCATCATAGCCCACCGCCTTAGCACAATAAGGAATGCTGATAACATTGCCGTTATTCACCAAGGAAGAGTCATAGAAAAAGGAACATGTGCTGAGCTCACTAAAGACCCTGATGGAGCTTATAGTCAACTCATTAGGCTGCAAGAAATTAAAAAGGATTCATCAGAAAAGTATGGTGCTAATGACTCAGATATGCTAGAAAACTTTGTAGATTCTGGAAGAGAGTCAAGCCAAAGATCTTTAAGCCGTGGATCATCAGGGATAGGAAAAATCCGTGACAACTCATTCCGAATATCAAATTCTATTCCTACCACACTAGTAAAAGGAGCTGAAGTTGTTCCTTCAACATCAGCATCATCACATATAAGTAAAACTCAAGATGTCCCATTTCTCCGCCTCGCTTATCTTAACAAGCCTGAAATCCCAGTATTACTAATAGGGACTCTAGCTGCAGCAGTTATCGGAGCAATACTACCTATTGTGGGATTTCTAACCTCCAAGATGATAAATACATTCTTTGAGCCTGCAGATGAACTTCGTAAAGACTCAAAGTTTTGGTCACTAATATTTGCTTCCCTTAGTGTGGCTTGCTTCACTTTCCATCCATTAAGGTCCTACTTTTTTGCGGTAGCTGGTTCGAAATTGATAAAAAGAATCCGCTTGATGTGTTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATAAATCTGAGAATTCAAGCGGTGCACTTGGAGCAAGGCTATCAACTGATGCTGCTTCAATTCGAACGTTGGTTGGTGATGCACTTGGTTTGCTTGTTCAAGATATTTCTACAGTAATTACAGCCTTGGTAATTTCCTTTGAGGCGAATTGGCAGCTTTCTCTCATCATTATTGTTTTGCTACCGCTACTATTTGTAAATGGACATTTTCAAATTAAGTCCATGCAAGGATTCAACACAGATGCAAAGAAACTATTTGAGGAAGCAAGTCAAGTAGCGAAGGATGCAGTAGGGAATATCAGAACAGTTTCTGCTTTCTGTGCCGAAGAGAAGGTGATGGAGTTATATCAGAAGAAATGTGTAGTACCAGTCCAGACCGGAAAAAGGCAGGGTTTAGTTAGTGGAATTGGTTTTGGCATATCAAACTTCTTTTTGTTTTGTGTCTATGCATGCAGTTTTTATGCCGGCGCCCAACTTGTTGAGAAGGGCAAAACATCAATATCAGAAGTTTTTCAAGTATTTTTCTCTCTCACAATGGCAGCTGTCGCAATAGCTCAATCTGGCTTCACGGCACCAGGAGCTAGTAAAGCAAAAAGTTCTGCTGCTTCTATATTTGCTATTCTTGATCAGAAATCAACAATAGACACCAGTGATGAATCAGGAATGACACTAGAAGATGTGAAAGGAGAGATAGAGTTTCACAATGTTGCTTTCAAGTATCCAACTAGACCCGATGTTCATATATTCAAAAAGCTTTCCTTAACCATTCATTCAGGACAGACTGTTGCATTGGTTGGAGAAAGTGGAAGCGGAAAATCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCAGATTCAGGTCAGATTAAACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAACAAATGGGCCTGGTAAGCCAAGAGCCTGTGCTGTTCAATGACACTATCAGAGCCAACATTGCTTATGGAAAAGGTGGTAATGCAACTGAGGCTGAAATTATAGCTGCAGCAGAACTAGCAAATGCTCATAAGTTCATTAGCAGTTTACAACAGGGGTATGATACAATAGTAGGGGAGAGAGGAACTCAACTATCTGGAGGACAGAAGCAACGCGTAGCAATTGCGAGAGCCATAGTTAACAGTCCAAGAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAAGATGCACTTGATAGAGTGAGGGTGGACAGAACAACCATTGTGGTGGCTCATAGATTATCTACCATAAAGGGTGCAAATTCAATAGCAGTTGTTAAAAATGGAGTCATTGAAGAAAAAGGAAAGCATGATACATTGCTCAACAAGGGTGGTACTTATGCTTCTTTAGTAGCATTGCATACAAGTAGCACTTCATCTTAA 3894 0.4014 MLAKASLDEDIATTEMTGSASHHPPVPAGSENVQDMADMNQKNSKKNKVKDQSNKTVPFYKLFSFADSWDYMLMFVGTLSAVGNGISMPLMTIIIGDTLDAFGGNVNTKQIVHQVSKVSLKFAIMGACTFFAVFLQVSCWMITGEIQSARIRALYLKAILRQDISFFDSETNRGEVVGRMSGDTVLIQEAMGEKVGKFIQYVSCFLGGLVVAFIKGWLLTLILLSSLPLLVLSGSLMSFAYAMMASRGQAAYSEAAIIVERIIGSIRTVASFTGEKQAIAQYNISLTKSYRIGVQEGLTIGLGLGTVRLFVYCTYALTVWFGGKMVLEKGYTGGEVISVFFAILTGSMSLGQASPCLTAFAAGQAAAFKMFETIKRKPAIDAYDTTGRKLDDIRGDIELREVCFSYPARPNELIFNAFSISISSGTTAALVGKSGSGKSTVISLIERFYDPQGGEILIDSINLREFQLKWIRQKIGLVSQEPVLFAGTIKENIGYGKDAATDDEIRAAAELANAANFINKFSHGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERLVQETLDRIMINRTTIIIAHRLSTIRNADNIAVIHQGRVIEKGTCAELTKDPDGAYSQLIRLQEIKKDSSEKYGANDSDMLENFVDSGRESSQRSLSRGSSGIGKIRDNSFRISNSIPTTLVKGAEVVPSTSASSHISKTQDVPFLRLAYLNKPEIPVLLIGTLAAAVIGAILPIVGFLTSKMINTFFEPADELRKDSKFWSLIFASLSVACFTFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDKSENSSGALGARLSTDAASIRTLVGDALGLLVQDISTVITALVISFEANWQLSLIIIVLLPLLFVNGHFQIKSMQGFNTDAKKLFEEASQVAKDAVGNIRTVSAFCAEEKVMELYQKKCVVPVQTGKRQGLVSGIGFGISNFFLFCVYACSFYAGAQLVEKGKTSISEVFQVFFSLTMAAVAIAQSGFTAPGASKAKSSAASIFAILDQKSTIDTSDESGMTLEDVKGEIEFHNVAFKYPTRPDVHIFKKLSLTIHSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATEAEIIAAAELANAHKFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDTLLNKGGTYASLVALHTSSTSS 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05025 1297 PANTHER ABC TRANSPORTER B FAMILY 39 638 IPR039421 -
Trre15g05025 1297 Pfam ABC transporter 416 564 IPR003439 GO:0005524
Trre15g05025 1297 ProSitePatterns ABC transporters family signature. 536 550 IPR017871 GO:0005524|GO:0016887
Trre15g05025 1297 SUPERFAMILY ABC transporter transmembrane region 719 1033 IPR036640 GO:0005524|GO:0016020
Trre15g05025 1297 Pfam ABC transporter 1072 1221 IPR003439 GO:0005524
Trre15g05025 1297 CDD ABC_6TM_Pgp_ABCB1_D1_like 74 358 - -
Trre15g05025 1297 CDD ABC_6TM_Pgp_ABCB1_D2_like 721 1036 - -
Trre15g05025 1297 Pfam ABC transporter transmembrane region 74 348 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05025 1297 Pfam ABC transporter transmembrane region 731 1003 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05025 1297 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 397 633 IPR003439 GO:0005524
Trre15g05025 1297 Gene3D ABC transporter type 1, transmembrane domain 61 643 IPR036640 GO:0005524|GO:0016020
Trre15g05025 1297 MobiDBLite consensus disorder prediction 1 33 - -
Trre15g05025 1297 FunFam ABC transporter B family member 1 1043 1292 - -
Trre15g05025 1297 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 75 362 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05025 1297 Gene3D ABC transporter type 1, transmembrane domain 1020 1293 IPR036640 GO:0005524|GO:0016020
Trre15g05025 1297 Gene3D - 387 636 IPR027417 -
Trre15g05025 1297 Gene3D - 1043 1292 IPR027417 -
Trre15g05025 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1042 1290 IPR027417 -
Trre15g05025 1297 ProSitePatterns ABC transporters family signature. 1193 1207 IPR017871 GO:0005524|GO:0016887
Trre15g05025 1297 FunFam Uncharacterized protein 1017 1043 - -
Trre15g05025 1297 CDD ABC_MTABC3_MDL1_MDL2 397 635 - -
Trre15g05025 1297 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1053 1290 IPR003439 GO:0005524
Trre15g05025 1297 SUPERFAMILY ABC transporter transmembrane region 55 381 IPR036640 GO:0005524|GO:0016020
Trre15g05025 1297 CDD ABC_MTABC3_MDL1_MDL2 1053 1288 - -
Trre15g05025 1297 Gene3D ABC transporter type 1, transmembrane domain 711 1019 IPR036640 GO:0005524|GO:0016020
Trre15g05025 1297 FunFam ABC transporter B family member 1 711 1016 - -
Trre15g05025 1297 SMART AAA_5 1080 1274 IPR003593 GO:0016887
Trre15g05025 1297 SMART AAA_5 424 610 IPR003593 GO:0016887
Trre15g05025 1297 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 732 1018 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05025 1297 FunFam ABC transporter B family member 1 387 636 - -
Trre15g05025 1297 FunFam ABC transporter B family member 9 61 393 - -
Trre15g05025 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 635 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05025 Trre-Chr15 60123703 60129312 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05025 40 635 Calmodulin-binding Proteins AT2G36910 37.209 4.88e-109 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05025 K05658 - gmx:100777713 1929.84