Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05019 ATGGCAACGGATATCAGTTTGGAAGGAGATATTCCGAGTCTTCAACCAGTTGTAGATATTGACAGAAAGCAAGATTCAGAGAAAAACAAGGCCAAAGATGAAAAAACCGACACAGTACACTTATACAAGCTTTTCGCATTTGCCGATCCTTTGGATCGTTTATTGATGTTTCTGGGGACTGTGGGTGCTATTGGGAATGGAATATCTATACCCTTGATGCTTTTAGTATTTGGCAATTTGATCAATGCATTTGGAGATTCCACGGACTCAATCGTTGTTGATGAAGTCTCCAAGGTGTCTCTAAAATTTGTATACTTGGGGGCAGGTGCCTTTGTTGGGTCATTTTTGCAGTTAACATGCTGGATGATCACCGGAGAGAGACAGGCTGCAAGAATTAGAGGCTTATACCTTAAAACAATTTTGAGACAAGATGTGAGTTTCTTTGATAAGGAAACTAACACTGGGGAGGTTGTCGGAAGGATGTCAGGTGATACTGTTCTTATTAAAGATGCCATGGGGGAGAAGGTCGGACAGTTCATACAGTTTATAGCAACTTTCATAGGAGGTTTTGTCATAGCATTCACTAAGGGATGGCTTCTAACTGTTGTCATGCTATCTAGTATACCACTTATTGTCATATCTGGTGCTGTGACAAGTATGGTTATTGCGAAAGCAACATCAACTGGACAAGAAGCTTATTCTAAATCAGCAAGTGTGGTAGAGCAGACAATAAGTTCCATCCGAACTGTTGCATCATTTACTGGGGAGAAAGAAGCTATAGCTAAATATAATCAGTCGTTAATCAAGGTCTACAAGACTTCAGTGCAGGAGGCACTAGCATCTGGTGTGGGGTTTGCTACACTCTTTTTTGTTTTTACCTCGAGTTATGCTTTGGCCGTATGGTTTGGCGGGAAACTGATAATAGAGAAAGGATATACAGGAGGGGATGTTATCACAATAATTTTTTGTGTATTTACTGGTTCGATGAATCTTGGGCAGACATCTCCAAGCCTAAGTGCTTTTGCCGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACGATTAAAAGGAAGCCAGAAATTGATGCCTATGACACAACTGGGCAAAAGCTTGATGATATTCGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTACCCTACAAGACCAGATGAATTAATATTCAATGGATTTTCTCTTTCATTACCAAGCGGCACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCTACAGTCGTTAGTTTGATAGAGAGATTCTATGATCCAACGGATGGCGAAGTTCTCATTGATGGCATCAACCTCAAAGAATTTCAACTTAAATGGATTAGACAGAAAATAGGCCTGGTCAGCCAAGAACCCGTTCTCTTTACTTGCACCATTAAGGAGAATATTGCCTATGGCAAAGATGGTGCAACTGATGATGAAATCAGAGCTGCAGCGGAACTTGCTAATGCCGCCAAATTTATAGATAAACTTCCTCAGGGACTAGATACAATGGTTGGTGAGCATGGAACACAGCTCTCTGGAGGTCAAAAGCAAAGAGTGGCAATTGCAAGAGCAATTTTGAAAGATCCAAGAATCCTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCAGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACCGGACAACTATCGTTGTAGCTCACCGCTTAAGTACAATAAGAAATGTTGACACCATTGCTGTCATTCATCAAGGAAAAATAGTTGAAAAAGGTTCGCATGATGTGCTCACCAAGGATCCCAATGGAGCCTATAGTCAGCTTATTAGACTGCAAGAAACGAAGGGGTCAGAACAAAATGACGTAAACGACACAAACAAGTCAAACAGTATAGTACATTCCGGAAGACAATCGAGTCAAAGATCTTTTTCCTCGAGATCTATAAGCCAAGGGTCAACTGGAAACAGTGGTCATCACTCATTCTCAGCATCGCATGTTGCGCCCACGACAGATGGCTTCTTAGAAACTGCAGATGGTGTACCTCAAGCTTCTCTTTCGATAGTTTCTTCACCACCAGAAGTGCCACTTTATCGGCTGGCATATTTTAACAAGCCTGAGATTCTAGTCTTATTGTTGGGGACTATAGCTGCAGTGCTACAAGGAATATTAATGCCCATTTTTGGGGTCTTGCTTTCTAAAATGATAAGTATTTTCTACAAGCCAGCTCATGAACTTCGTCATGATTCAAAAGTTTGGGCAGTAGTGTTTGAAGCGGTTGCTGTGGCAACATTACTCGTTATTCCATGTAGATTCTACTTTTTTGGTATTGCTGGAGGTAAGTTGATCCAAAGGATCCGGAACGTGTGTTTTGAGAAAATAGTTCACATGAATGTAAGTTGGTTTGATGAGGCTGAGCATTCAAGCGGAGCACTTGGAGCAAGGCTCTCCACTGATGCAGCTTCAGTTAGAGCTCTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATTGCTACAGTAATAGCTGGCTTGGTAATTGCTTTTCAAGCATGCTGGCAGCTTGCTTTTATAGTCCTTGCTTTGGCGCCTCTATTAGGACTAAATGGATATGTGCAAGTAAAAGTCTTGAAAGGATTTAGTGCAGATGCAAAGAAATTGTACGAGGAAGCAAGTCAAGTGGCGAATGATGCTGTAGGGAGTATAAGAACGGTTTCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATATCAGGGAAAATTTTATGCCTGCTGTTTTTATGCTGGAGCTCGACTTGTAGAGGATGGCAAATCTACATTCTCAGATGTTTTCCTTGTCTTTTTTGCTCTCAACATGGCAGCTATGGGAGTCTCTCAATCTGGGTCCTTGCTCCCTGATTCAAGTAATGCAAACGGTGCTACTGCGTCCATATTTGCTATTCTTGATCAGAAGTCACAAATAGACCCTAGTGATGAATCTGGAATGACACTGGAAGAAGTCAAGGGGGAAATTGAGTTTAACCATGTTAGTTTTAAGTATCCTATTAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGAACATTCACAGCGGCAAGACGGTTGCACTGGTCGGTGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGCTACAAAGATTCTATGACCCTAACTCAGGACACATTACACTTGATGGAATAGAAATTCAAAGGATGCAAGTGAAATGGCTGAGACAACAGATGGGACTGGTAAGCCAAGAGCCAGTTCTTTTCAATGATACGGTTCGAGCCAATATTGCATACGGAAAAGGAGGAGATGCAACAGAGGCAGAAATAGTAGCTGCCGCAGAACTTGCAAATGCTCACCAGTTCATAAGTAGTTTGCAGACGGGTTATGACACGATAGTAGGCGAGAGAGGAATTCAATTATCTGGGGGACAGAAGCAGCGTGTGGCAATTGCACGAGCAATGGTGAAGAATCCAAAAATACTACTACTAGATGAAGCAACAAGCGCACTTGATGCTGAGTCTGAAAAGGTGGTACAAGATGCACTTGACCGTGTTATGGTGGAGCGAACAACAATAATAGTGGCTCATAGGTTATCAACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGTGTTATAGCAGAGAAAGGAAAACATGAAGCATTGCTCCATAAAGGTGGTGATTATGCTTCTTTAGTGGCATTGCATACAAACGCAGGCGCTTCTTCATCTTAG 3765 0.4175 MATDISLEGDIPSLQPVVDIDRKQDSEKNKAKDEKTDTVHLYKLFAFADPLDRLLMFLGTVGAIGNGISIPLMLLVFGNLINAFGDSTDSIVVDEVSKVSLKFVYLGAGAFVGSFLQLTCWMITGERQAARIRGLYLKTILRQDVSFFDKETNTGEVVGRMSGDTVLIKDAMGEKVGQFIQFIATFIGGFVIAFTKGWLLTVVMLSSIPLIVISGAVTSMVIAKATSTGQEAYSKSASVVEQTISSIRTVASFTGEKEAIAKYNQSLIKVYKTSVQEALASGVGFATLFFVFTSSYALAVWFGGKLIIEKGYTGGDVITIIFCVFTGSMNLGQTSPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGQKLDDIRGDIELREVCFSYPTRPDELIFNGFSLSLPSGTTAALVGQSGSGKSTVVSLIERFYDPTDGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCTIKENIAYGKDGATDDEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTIVVAHRLSTIRNVDTIAVIHQGKIVEKGSHDVLTKDPNGAYSQLIRLQETKGSEQNDVNDTNKSNSIVHSGRQSSQRSFSSRSISQGSTGNSGHHSFSASHVAPTTDGFLETADGVPQASLSIVSSPPEVPLYRLAYFNKPEILVLLLGTIAAVLQGILMPIFGVLLSKMISIFYKPAHELRHDSKVWAVVFEAVAVATLLVIPCRFYFFGIAGGKLIQRIRNVCFEKIVHMNVSWFDEAEHSSGALGARLSTDAASVRALVGDALGLLVQNIATVIAGLVIAFQACWQLAFIVLALAPLLGLNGYVQVKVLKGFSADAKKLYEEASQVANDAVGSIRTVSSFCAEEKVMELYQGKFYACCFYAGARLVEDGKSTFSDVFLVFFALNMAAMGVSQSGSLLPDSSNANGATASIFAILDQKSQIDPSDESGMTLEEVKGEIEFNHVSFKYPIRPDVQIFRDLCLNIHSGKTVALVGESGSGKSTVISLLQRFYDPNSGHITLDGIEIQRMQVKWLRQQMGLVSQEPVLFNDTVRANIAYGKGGDATEAEIVAAAELANAHQFISSLQTGYDTIVGERGIQLSGGQKQRVAIARAMVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLHKGGDYASLVALHTNAGASSS 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05019 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 339 - -
Trre15g05019 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 614 IPR003439 GO:0005524
Trre15g05019 1254 Gene3D - 376 634 IPR027417 -
Trre15g05019 1254 Gene3D - 1006 1248 IPR027417 -
Trre15g05019 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 704 991 - -
Trre15g05019 1254 FunFam ABC transporter B family member 1 368 617 - -
Trre15g05019 1254 Pfam ABC transporter 1028 1176 IPR003439 GO:0005524
Trre15g05019 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 343 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05019 1254 Gene3D ABC transporter type 1, transmembrane domain 925 1005 IPR036640 GO:0005524|GO:0016020
Trre15g05019 1254 FunFam ABC transporter B family member 9 976 997 - -
Trre15g05019 1254 ProSitePatterns ABC transporters family signature. 517 531 IPR017871 GO:0005524|GO:0016887
Trre15g05019 1254 Pfam ABC transporter 397 545 IPR003439 GO:0005524
Trre15g05019 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1008 1245 IPR003439 GO:0005524
Trre15g05019 1254 FunFam ABC transporter B family member 1 998 1247 - -
Trre15g05019 1254 FunFam ABC transporter B family member 9 43 374 - -
Trre15g05019 1254 FunFam ABC transporter B family member 1 694 925 - -
Trre15g05019 1254 SUPERFAMILY ABC transporter transmembrane region 702 992 IPR036640 GO:0005524|GO:0016020
Trre15g05019 1254 MobiDBLite consensus disorder prediction 617 666 - -
Trre15g05019 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 616 IPR027417 -
Trre15g05019 1254 CDD ABC_MTABC3_MDL1_MDL2 378 616 - -
Trre15g05019 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 715 925 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05019 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1245 IPR027417 -
Trre15g05019 1254 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524|GO:0016887
Trre15g05019 1254 Gene3D ABC transporter type 1, transmembrane domain 101 923 IPR036640 GO:0005524|GO:0016020
Trre15g05019 1254 SUPERFAMILY ABC transporter transmembrane region 43 362 IPR036640 GO:0005524|GO:0016020
Trre15g05019 1254 PANTHER ABC TRANSPORTER B FAMILY 20 618 IPR039421 -
Trre15g05019 1254 Pfam ABC transporter transmembrane region 56 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05019 1254 Pfam ABC transporter transmembrane region 714 923 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g05019 1254 CDD ABC_MTABC3_MDL1_MDL2 1008 1243 - -
Trre15g05019 1254 SMART AAA_5 405 591 IPR003593 GO:0016887
Trre15g05019 1254 SMART AAA_5 1035 1228 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05019 Trre-Chr15 60071611 60076682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05019 8 1246 Calmodulin-binding Proteins AT2G36910 42.835 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05019 K05658 - gmx:100800293 1899.79