Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05013 ATGGCGATATTGAACCTTGGGAAGAAGCAGAATAAGAAGTTGCATTGTGAAGAAGAAGGAATGAGACTTGGGAAATATGAGTTGGGTAGGATTCTTGGTGAGGGTAATTTCGGTAAAGTTAAGTTTGCTAGGAACACTGATACTAAACAACCTTATGCTATTAAGATTATTGACAAGAACAAGATCATTGATCTTAATATCACCAACCAGATAAAGAGGGAAATAGGTGCCTTAAAGCTCCTAAGGCATCCCAACGTTGTTAAACTATACGAGGTCTTGGCTAGTAAAACAAAAATTTACATGGTACTTGAGTATGTGACTGGAGAAGAGTTATTTGACAAAATTGCATCCAAGGGTAAACTTACAGAAGGTGAAGGTAGGAAGCTGTTCCACCAGTTGATTGATGGTGTGAGCCACTGCCACAGTAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTACTTGTGGATGTCAAAGGGAATCTAAAGATAACTGATTTTGGTCTTAGTGCTTTACCCCAACAGTTTAGGGCAGATGGATTGCTGCATACAACTTGTGGAAGTCCAAATTATGTTGCACCAGAGATTCTTGCTAATAGGGGCTATAATGGTGCATCATCAGATGTATGGGCATGTGGTGTTATCTTGTATGTAATCCTAGCAGGATACCTTCCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAGAAGGTTTTGAAAGGAGATTTTCAAATGCCAAAATGGTTATCACCTGGTGCACAAAACATTATAAAGAGGATTCTTGATCCAAACCCTCAAACTAGAATAACAATGGCGGGGATCAAAGAAGATTTGTGGTTCAAGGAAGGATATAATCAAGCAGATCTTGAAGACGAGGAGGAGGATGTATACATTGACAATCAAGCTTTTTCCGCCCGTGAACTGTCACATGAAGAAGAAAAAAAGAGTTTAGAATCGCCGATCCGTATGAATGCATTTCAGTTGATAGGGATGTCTTCATGCCTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTTTCTGAGAGGAAGATAAGGTTTACAGCTAATCTTTCAGCCAAAGATCTGATGACAAAGATTGAAAATGATGTAACAGAAATGGAATTTAGAGTTCAAAAGAAAAATGGCAAAATGAAAGTGACACAAGAGAACAAGGAGCATAAAACTCTTGGCAGCCTCTCAGTGGCAATAGAGGTTTTTGAAATAAGTTCATCATTGTATGTAGTAGAATTAAGGAAGTGTCATGGAGATGCCTCTGTATATAGACAGTTATGCAAGAAGTTATTAAATGATTTGAGTGTTCCCCAAGGAAAGCACTAA 1341 0.3863 MAILNLGKKQNKKLHCEEEGMRLGKYELGRILGEGNFGKVKFARNTDTKQPYAIKIIDKNKIIDLNITNQIKREIGALKLLRHPNVVKLYEVLASKTKIYMVLEYVTGEELFDKIASKGKLTEGEGRKLFHQLIDGVSHCHSKGVFHRDLKLENVLVDVKGNLKITDFGLSALPQQFRADGLLHTTCGSPNYVAPEILANRGYNGASSDVWACGVILYVILAGYLPFDDRNLAVLYQKVLKGDFQMPKWLSPGAQNIIKRILDPNPQTRITMAGIKEDLWFKEGYNQADLEDEEEDVYIDNQAFSARELSHEEEKKSLESPIRMNAFQLIGMSSCLDLSGFFEKEDVSERKIRFTANLSAKDLMTKIENDVTEMEFRVQKKNGKMKVTQENKEHKTLGSLSVAIEVFEISSSLYVVELRKCHGDASVYRQLCKKLLNDLSVPQGKH 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05013 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 17 424 - -
Trre15g05013 446 ProSiteProfiles Protein kinase domain profile. 26 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05013 446 Pfam Protein kinase domain 26 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05013 446 FunFam Non-specific serine/threonine protein kinase 19 321 - -
Trre15g05013 446 CDD CIPK_C 325 436 - -
Trre15g05013 446 Pfam NAF domain 323 380 IPR004041 GO:0007165
Trre15g05013 446 Gene3D Kinase associated domain 1, KA1 319 441 - -
Trre15g05013 446 FunFam Non-specific serine/threonine protein kinase 321 442 - -
Trre15g05013 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Trre15g05013 446 Gene3D Transferase(Phosphotransferase) domain 1 106 308 - -
Trre15g05013 446 SUPERFAMILY Protein kinase-like (PK-like) 23 320 IPR011009 -
Trre15g05013 446 FunFam Non-specific serine/threonine protein kinase 17 105 - -
Trre15g05013 446 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Trre15g05013 446 SMART serkin_6 26 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05013 446 Gene3D Phosphorylase Kinase; domain 1 17 105 - -
Trre15g05013 446 ProSiteProfiles NAF domain profile. 319 343 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05013 Trre-Chr15 60025492 60030482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05013 89 439 CBL-interacting serine-threonine protein kinases AT3G17510 68.466 1.52e-168 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre15g05013 Pkinase 2.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05013 K07198 - gmx:100777468 680.248