Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05004 ATGGAGTTAACTCCAAGAGGAAGAAATAACTTAACTCCAAGAGGAAGAAATCAAGGTCATGTTGTGACTTTTGATAGAGATGCAGATTCATTTGTTGAGGAAGATAAAGAGCTTCAATCTAAATGGGCTGCTATAGAGAAATTACCAACTTTCAAAAGGATTAAAACTTCTTTTGTTGATGAAATTACTCAGGAGGAAAATGGTAGTAGATGGCAAAGAAGTAGTAGTAAAAGGGTTGTTGATGTTACTAAACTTGGAGCTGTGGATAAACGTTTGTTTATTGATAAGCTTATAAAGCATATTGAGAATGATAATCTCAACTTACTTCAGAAACTTAGAGAAAGGATGGAAAGAGTAGATGTGAAGTTACCTAGTGTAGAAGTGAGGTACAAGAATCTGAATGTAGAAGCAGAATGTGAGGTTGTTCAAGGGAAGCCACTTCCTACTCTATGGAACTCTTTTTCTAGCTTATTTTCGGGCTTAGTGAAAACTATATATTGCAATTCTCAAGACACCAAGATGGGCATTCTGAACGATGTTAGCGGCATCATAAAACCATCAAGGCTTACTCTTCTTCTCGGTCCACCTAGCTGTGGGAAAACTACCTTGCTAATGGCACTGGCTGGAAAATTAGAGCAATCTCTCACGGTTTCTGGAGAAATAAGTTACAATGGTCACATGCTAGATGAATTTGTTCCTCAAAAATCATCAGCATACATAAGCCAGTATGACCTGCATATTCCTGAGATGACAGTGAGGGAAACAATCGACTTCTCGGCACGCTGTCAGGGGGTTGGAAGCAGAGCTGATATTATGACTGAAATCACCAGGAAAGAAAAAGAACAAGGAATCTTCCCTGACCCGGATATCGATACCTATATGAAGGCTATTTCAGTTGAAGGACAAAGTGAAAATCTTCAGACAGAATATGTTTTAAAGATACTCGGATTGGATATTTGTGCGGACACACTGGTTGGAGATGCACTAGATAGAGGCATTTCAGGGGGACAAAAGAAAAGGCTAACTACAGGAGAGATGATTGTAGGTCCCATAAAAGCACTTTTTATGGATGAAATATCAACTGGCTTAGACAGCTCCACTACTTTTCAAATAGTTACATGCCTCCAGCAATTGGTGCACATCACAGATGCAACAGCAGTGCTTTCACTCCTCCAACCAGCACCGGAAACCTTTGAGTTATTTGATGATCTTATATTGATGGCAGAGGGGAAGATAGTATACCATGGCCCCTGCAGTCAAGCAATCCAATTCTTTAGGGATTGCGGTTTCTGGTGCCCTGAGAGAAAAGGAGTGGCAGACTTTCTTCAAGAGGTTACCTCTAAGAAGGATCAAAGGCAATACTGGTACCGCACAGATATTCCTTACAGTTACGTTTCAGTGGACGAGTTCTCTCAGATCTTCAAATCAAGTTACTGGGGAAGAATGTTAGATGATGAGCTTTCAAAACCATATGATAAATCTCAATCTCATAAAAGTTCTTTATCATATAGCAAGTACTCATTGGGAAAATTGGATTTGTTTAAAGCTTGTATGAAGAGGGAGATTCTTCTGATGAAACGAAACTCGTTTATCTATATATTCAAAACTGTGCAGCTTACAATCACTGCAATCATAACAATGACGGTTTTCCTGCGCACACAGCTCGATGTGGACTTGTTAGGATCAAACTATTTATTAGGTTCATTGTACTATACGCTTGTACGTCTCATGACGAATGGAGTTGCCGAGTTGATCATGACGATTACTAGACTCCCAGTTGTTTATAAGCAGAAAGCATTCTATCTGTATCCAGCTTGGGCTTACTGTCTTCCAGCTGCAATTCTAAAAATTCCATTTTCGGTTCTTGATTCTCTTGTTTGGACATCAATAACATATTATGTTATAGGCTACAGCCCAGAAATAACAAGGTTCCTCCGCCAGTTTCTTTTGCTTATCTTTCTGCATATGTCATCAACCTCCATGTGTCGTTCACTTGCCGCCGTTTTTAAAACTGATGTTGCAGCTACAACCGTTGGTTCCTTGGTCTTAGTACTCATGTTCTTGTTTGGAGGCTTTATTCTTCCTCGACCATCATTGCCAAAGTGGTTAAGATGGGGTTTTTGGCTTTCTCCCATGTCATATGGGGAAATAGGAATAACACTCAATGAATTTCTTGCTCCCCGCTGGCAAAAGATGACAGACGGAAACATTACCGTTGGAAGGGAAATTCTCAAGAGTCGTGGTTTAGACTTTGATAGCAACTTCTTCTGGATATCGATTGGAGCATTACTTGGTTTCACTGTAGCATTTGATATTCTATTTGTGGTAGCATTAACTTACTTAAAAGAGCCTAAGCTATCTCGAGCTTTAGTTTCAAAAAAGAAGCTGCCTCAACTAAAAGGAGGAGAAAGAAGTAACGAAGTTGAATTAAAAAATAAGTCAGTAGCAGTTGATATTAGCCACACATCAAAGGAAACTCAAAACACAGGGAAAATGGTTCTACCCTTTTTGCCACTGTCAATAGCATTTAAAGATGTCCAGTATTTTGTTGACACTCCTCCGGAGATGAAAAAACATGGTTCGAACGAGAAAAATCTACAATTGCTCTGCGATATCACGGGAGCTTTTAGGCCAGGAATCCTAACTGCACTGATGGGAGTCAGTGGAGCAGGGAAGACAACACTCATGGATGTTCTTTCAGGAAGAAAAACTGGAGGAATCATTGAAGGAGATATAAGAATTGGAGGGTATCCTAAAGTGCAAAAGACATTTGCAAGAGTTTCAGGTTATTGTGAGCAAAATGACATACATTCTCCATATATAACAGTTGAAGAATCTGTTCGATACTCGGCTTGGTTGCGGTTGCCGAGTGAGATTGATTCAGCAACAAAAGGGAAATTTGTGGAAGAAGTACTTGAAACAATTGAACTTGATGATATAAAGGATAGTTTAGTTGGCATTACTGGCCAAAGTGGATTATCGACAGAGCAACGTAAAAGACTAACCATTGCAGTGGAGCTTGTCTCAAATCCATCAATCATTTTTATGGATGAACCTACATCAGGTTTGGATGCCCGAGCTGCAGCTGTTGTTATGCGTGCAGTGAAGAATGTTGTTGCCACTGGTAGGACCACAGTTTGCACTATACATCAGCCAAGCATTGATATATTTGAGACTTTTGATGAGTTGATTCTAATGAAATCTGGAGGAAAGATCATTTATAATGGACTGTTAGGCCATCATTCAAATAAGCTGATTGAATATTTTCAGAGTATACCGGGAGTTCCAAAGATCAAGGACAATTATAATCCTGCAACATGGATGATGGAAGCTACCTCAGCAGCCGTAGAAGACGAACTTAAAATCGATTTCGCTAATATATACAAAGAGTCACCCCTTAACCGGGAAACCCTTGAAATGGTGAGAGTGTTAAGTGAACCAGAACAAGGTTCAAAAGACTTGAACTTTTCAACTCGCTTCCCACAAAATTACTTGGGGCAGTTTATGGCGTGCCTATGGAAGCAACACTTATCGTATTGGAGAAGTCCCGAGTACAATTTAATAAGATTTGTGTTCATGATTGTTGCGGCAATAATATTTGGGGCAGTATTTTGGCAGAAAGGGAAAGAAATAAACACTCAGCAGGATTTGTTCAATGTGTTTGGATCAATGTATATTGCTGTAATATTCTTGGGCATAAATTACTGTTCAACAATTCTACCCTACGTGGCAACCGAGCGATCCGTCTTGTATCGAGAAAAATTTGCAGGAATGTATTCTTCCATGGCTTATTCATTTGCACAGGTGGCTATTGAAATACCATATATCTTAGTGCAAGCAATTTTATATGTGGCTATCACATATCCAATGATTGGTTTCCACTGGTCAGTTCCGAAGGTCTTTTGGTACTTCTACACCACATTCTGCACATTTTTATACTTTGTGTATCTTGGAATGCTGATAATGTCATTAAGCTTAAATCTGGATCTAGCTTCTGTATTGTCAACTGCAGTCTACACCATATTCAATCTCTTTTCTGGATTCCTCATGCCAGGACCTAAAATTCCTAAATGGTGGGTTTGGTGCTACTGGATTTGCCCTACAGCTTGGTCCTTAAAAGGCCTCTTAACTTCACAATATGGAGACATGGAGAAGGAAATACTCATATTTGGGGACAAAAAATCAGTTGGTGCCTTTCTAGAGGATTACTATGGGTTCAGGCATGACAGATTAAGTGTTGTGGCTGTGGTGCTCATTGCTTACCCAATTATTTATGCATCTCTCTTTGCCTATTGCATAGGGAAAATAAATTACCAAAAAAGATAG 4326 0.3944 MELTPRGRNNLTPRGRNQGHVVTFDRDADSFVEEDKELQSKWAAIEKLPTFKRIKTSFVDEITQEENGSRWQRSSSKRVVDVTKLGAVDKRLFIDKLIKHIENDNLNLLQKLRERMERVDVKLPSVEVRYKNLNVEAECEVVQGKPLPTLWNSFSSLFSGLVKTIYCNSQDTKMGILNDVSGIIKPSRLTLLLGPPSCGKTTLLMALAGKLEQSLTVSGEISYNGHMLDEFVPQKSSAYISQYDLHIPEMTVRETIDFSARCQGVGSRADIMTEITRKEKEQGIFPDPDIDTYMKAISVEGQSENLQTEYVLKILGLDICADTLVGDALDRGISGGQKKRLTTGEMIVGPIKALFMDEISTGLDSSTTFQIVTCLQQLVHITDATAVLSLLQPAPETFELFDDLILMAEGKIVYHGPCSQAIQFFRDCGFWCPERKGVADFLQEVTSKKDQRQYWYRTDIPYSYVSVDEFSQIFKSSYWGRMLDDELSKPYDKSQSHKSSLSYSKYSLGKLDLFKACMKREILLMKRNSFIYIFKTVQLTITAIITMTVFLRTQLDVDLLGSNYLLGSLYYTLVRLMTNGVAELIMTITRLPVVYKQKAFYLYPAWAYCLPAAILKIPFSVLDSLVWTSITYYVIGYSPEITRFLRQFLLLIFLHMSSTSMCRSLAAVFKTDVAATTVGSLVLVLMFLFGGFILPRPSLPKWLRWGFWLSPMSYGEIGITLNEFLAPRWQKMTDGNITVGREILKSRGLDFDSNFFWISIGALLGFTVAFDILFVVALTYLKEPKLSRALVSKKKLPQLKGGERSNEVELKNKSVAVDISHTSKETQNTGKMVLPFLPLSIAFKDVQYFVDTPPEMKKHGSNEKNLQLLCDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQKTFARVSGYCEQNDIHSPYITVEESVRYSAWLRLPSEIDSATKGKFVEEVLETIELDDIKDSLVGITGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVATGRTTVCTIHQPSIDIFETFDELILMKSGGKIIYNGLLGHHSNKLIEYFQSIPGVPKIKDNYNPATWMMEATSAAVEDELKIDFANIYKESPLNRETLEMVRVLSEPEQGSKDLNFSTRFPQNYLGQFMACLWKQHLSYWRSPEYNLIRFVFMIVAAIIFGAVFWQKGKEINTQQDLFNVFGSMYIAVIFLGINYCSTILPYVATERSVLYREKFAGMYSSMAYSFAQVAIEIPYILVQAILYVAITYPMIGFHWSVPKVFWYFYTTFCTFLYFVYLGMLIMSLSLNLDLASVLSTAVYTIFNLFSGFLMPGPKIPKWWVWCYWICPTAWSLKGLLTSQYGDMEKEILIFGDKKSVGAFLEDYYGFRHDRLSVVAVVLIAYPIIYASLFAYCIGKINYQKR 1441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05004 1441 Pfam ABC-2 type transporter 1050 1120 IPR043926 GO:0140359
Trre15g05004 1441 Pfam ABC-2 type transporter 392 445 IPR043926 GO:0140359
Trre15g05004 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 434 IPR027417 -
Trre15g05004 1441 SMART AAA_5 186 419 IPR003593 GO:0016887
Trre15g05004 1441 SMART AAA_5 878 1070 IPR003593 GO:0016887
Trre15g05004 1441 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 841 1093 IPR003439 GO:0005524
Trre15g05004 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 865 1076 IPR027417 -
Trre15g05004 1441 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 156 434 IPR003439 GO:0005524
Trre15g05004 1441 Pfam ABC-transporter N-terminal 96 152 IPR029481 -
Trre15g05004 1441 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 29 1441 - -
Trre15g05004 1441 Pfam ABC transporter 871 1021 IPR003439 GO:0005524
Trre15g05004 1441 Gene3D - 855 1088 IPR027417 -
Trre15g05004 1441 Gene3D - 162 426 IPR027417 -
Trre15g05004 1441 Pfam Plant PDR ABC transporter associated 729 791 IPR013581 -
Trre15g05004 1441 CDD ABCG_PDR_domain2 838 1076 IPR034003 -
Trre15g05004 1441 Pfam ABC-2 type transporter 1167 1379 IPR013525 GO:0016020|GO:0140359
Trre15g05004 1441 Pfam ABC-2 type transporter 513 724 IPR013525 GO:0016020|GO:0140359
Trre15g05004 1441 Pfam ABC transporter 177 359 IPR003439 GO:0005524
Trre15g05004 1441 FunFam ABC transporter G family member 34 855 1087 - -
Trre15g05004 1441 FunFam ABC transporter G family member 34 164 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05004 Trre-Chr15 59964623 59972757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05004 865 1053 Calmodulin-binding Proteins AT2G36910 28.431 3.36e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05004 K08711 - gmx:100779615 2457.17