Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04995 ATGATGGCTCAAACCAAAAATTACATTCAGAATCGGAACCAACAATTAGATATTGAAGAGATACTACGTGAAGCACAGCATCGCTGGCTTCGACCTGCTGAAATATGTGAGATACTTCGCAATTACCGGAAGTTTGAGTTAACACCGAATCCACCTGTTAGGCCTCCTGCTGGGTCACTGTTCTTGTTTGATCGAAAAGTACTCCGGTACTTTCGCAAGGATGGTCACAGGTGGAAGAAGAAAAAAGATGGCAAGACTATAAGAGAAGCTCACGAAAAGTTGAAGGCTGGTAGCGTTGAGGTTTTGCATTGTTACTATGCTCGTGGCGAGGATAATGAAAACTTTCAAAGGAGAATTTATTGGATGCTTGATGAGAAGTTAGAGCACATTGTCCTCGTGCATTATCGAGAAATTGAAGAGGGCTGCAAGTCTGGCATCTCAAATTTGCCTGTAGTTCCAGTAACCCCAGTTGGTAGCTCTCAGAGTAGTTCAGTGCCTTCCTCTGCCAAAATAAGCTCACCAATATCTGTTGTTCAAGTATCTTTGACATCAAGTGCAAATGAAATTGATCAGCACAGAGCTTCTGAGTATGAGGAGGACAAGTTACAGAATTGTCCTCAAGTGTCTCATGCTCAATCTACCAGAAATTCCATGCATCATTGTGCACCTCCGCTTTCACTTGAAGCTACTGGGTTTTCTGAGTTATTGAAGAACCCCTTTATTTCAACACGGACATCTCTTCATTGCTTTTCTCCTGGGAATGATGTGCCTCCCTGGGCATTCATTCAGAACTCTAGCAGAAATGGAGTTAATATGTATGATAGAGAACTTCATGTTCAAGGATCAAGTGACGGCCCTGAAGCTTATTTCACTGTAGCACAAAGTAATGCAAGGTTAGATTCAGTTTGCAGGACACAGGATGGTGTAGTTTTAAGAGATAGGCCCATCACTGACGTGTATATGCACCCTATTACAGGAGCTTCACAGACTGTTAATCAGCAATTGAAAAAGGAGCTTGATATAGGCTCATTTCATACCCCATTCAGTGATCATACTGATCATCCAGTTGTTGCTCCTCAAGACGGTGGTGCATACAAAGATGAGTCGGAACATGTTGAGTTTGGGGAATTGAAGAAGCTTGATAGTTTTGGACAGTGGATGGATAAGGAGATTGGTGGAGACTGTGATAATTCCTTGATGGCTTCAGATTCTGGCAATTATTGGAATACACTTGATGCTGATAATAAGGATACGGAGGTGTATAGTTTACGCCAGATGCAGTTGGATGTGGATTCATTAGGCCCTTCTCTTTCCCTAGAACAGCTATTTAGTATCCACGACTTTTCTCCAGATTGGGCATATTCTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTGGGGAGTAAAAAGCTTTCTGGTGAGACCAAATGGGGATGTATGTTCGGCGAAATTGAGGTTTCTGCTGAAGTTTTGACAGAGAATGTCATACGCTGTCAGACTCCTTTGCATTCACCTGGTCGTGTTCCATTCTATGTTACATGCAGTAATCGGTTAGCCTGTAGTGAGGTCAGAGAATTTGAATATCATGAAAATCCATCAAAATTCATAGGTCCCGACGGTATTAAAATATCACCGGAAGATGAGGTACAACTTCAAATTCGACTTCTTAGACTAGTAGAATTGGAACCTGACAACAAGTGGTTCAAGTGCTCTGTTCCTGAATGTGAAAAATGTAAACGTATGGAAACAATGTATTTCGTGAGAGATGATAGTGAAGTATTTGGAGAAACTTTCAAGATTGATGGACGTGATCATAATAACACTAGAGATGTATTGTTTCAGAGATTAATGAGAGACAAGCTTTATGATTGGTTGGTATTTAAGGTTCATGAAGGAGGAAAAGGACAACATATATTGGATAATGAAGGCCAAGGAGTCTTACATTTGGCAGCTGCACTTGGTTATGTATGGGCTCTGGGGCCATTAGTTGCCGCTGGTATCAGTCCTAACTATAGGGATGCTCATGGAAAAACAGGACTTCACTGGGCTTCATATTTTGGGAGAGAAGAAACAGTAATTGCGTTAGTCAAATTAGGAGCATCCCCAGGGGCCATTGAGGATCCAACATCAGCATTTCCTCGAGGACAAAAAGCAGCCGATTTAGCTTCAAGTAGAGGACATAAAGGAATTGCTGGGTATTTGGCTGAAGCAGATCTAACAAGTCAATTGTCTATGTTAACTGTCAATGAAAATGATGTGTACAACATTGCCACAACTGCAGCAGTTGACAGTACTTTTGAGTCTGTTGACAGTGACTCGTCTTATCTGACTATGGATGAGCAGCACGGTCTGAAAGAGTCACTTGCTGCTTTCCGAAAATCAGCCCATGCAGCTGCTTTGATCCAAGAAGCCTTTAGGGCAAAATCATTTTGTCAAAGACAATTAACCAAGAGTAGTGATGATATTTCTGAAGATGTTCTTAATGTAGTTGCTGATTCTTTGAACAAGGTTCAGAAGATAGGCCACTTCGAGGATTATTTACATTTTGCAGCTTTAAGGATTCAAAAGAAATATCGTGGGTGGAAAGGAAGAAAAGATTTTTTGAAAACACGCAACCGCATAATAAAAATTCAGGCTCATTTTAGAGGACACCAAGTTCGTAAGCAGTACAAAAAAGTTATTTGGTCTGTTAGCATCGTAGAAAAGGCAATACTGCGTTGGAGGCGGAAAGGAGCTGGTCTGCGAGGGTTCCGGGTTGGGCAGCCAGTTGGTATCATGGCAAAAGATGCTGAAAATAGTGACGACGAGTATGACTTTCTTAGCATTGGACGGAAACAGAAATCAGATGATGTAAGGAAAGCTCTTGATAGAGTTAAGTCCATGGTTCGTAATCCAGAGGCAAGGGATCAATATATGAGGCTAATCATGAAATATCAGAATTTTAAGATTGATTATGGCGGAACCAGTCAATCACAGCATGTTGACTAG 2994 0.4132 MMAQTKNYIQNRNQQLDIEEILREAQHRWLRPAEICEILRNYRKFELTPNPPVRPPAGSLFLFDRKVLRYFRKDGHRWKKKKDGKTIREAHEKLKAGSVEVLHCYYARGEDNENFQRRIYWMLDEKLEHIVLVHYREIEEGCKSGISNLPVVPVTPVGSSQSSSVPSSAKISSPISVVQVSLTSSANEIDQHRASEYEEDKLQNCPQVSHAQSTRNSMHHCAPPLSLEATGFSELLKNPFISTRTSLHCFSPGNDVPPWAFIQNSSRNGVNMYDRELHVQGSSDGPEAYFTVAQSNARLDSVCRTQDGVVLRDRPITDVYMHPITGASQTVNQQLKKELDIGSFHTPFSDHTDHPVVAPQDGGAYKDESEHVEFGELKKLDSFGQWMDKEIGGDCDNSLMASDSGNYWNTLDADNKDTEVYSLRQMQLDVDSLGPSLSLEQLFSIHDFSPDWAYSGVRTKVLIVGTFLGSKKLSGETKWGCMFGEIEVSAEVLTENVIRCQTPLHSPGRVPFYVTCSNRLACSEVREFEYHENPSKFIGPDGIKISPEDEVQLQIRLLRLVELEPDNKWFKCSVPECEKCKRMETMYFVRDDSEVFGETFKIDGRDHNNTRDVLFQRLMRDKLYDWLVFKVHEGGKGQHILDNEGQGVLHLAAALGYVWALGPLVAAGISPNYRDAHGKTGLHWASYFGREETVIALVKLGASPGAIEDPTSAFPRGQKAADLASSRGHKGIAGYLAEADLTSQLSMLTVNENDVYNIATTAAVDSTFESVDSDSSYLTMDEQHGLKESLAAFRKSAHAAALIQEAFRAKSFCQRQLTKSSDDISEDVLNVVADSLNKVQKIGHFEDYLHFAALRIQKKYRGWKGRKDFLKTRNRIIKIQAHFRGHQVRKQYKKVIWSVSIVEKAILRWRRKGAGLRGFRVGQPVGIMAKDAENSDDEYDFLSIGRKQKSDDVRKALDRVKSMVRNPEARDQYMRLIMKYQNFKIDYGGTSQSQHVD 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04995 997 CDD IPT 444 532 - -
Trre15g04995 997 Gene3D - 847 896 - -
Trre15g04995 997 Gene3D - 619 742 IPR036770 -
Trre15g04995 997 SMART iq_5 848 870 IPR000048 GO:0005515
Trre15g04995 997 SMART iq_5 871 893 IPR000048 GO:0005515
Trre15g04995 997 SUPERFAMILY Ankyrin repeat 634 739 IPR036770 -
Trre15g04995 997 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 983 - -
Trre15g04995 997 Pfam IQ calmodulin-binding motif 852 869 IPR000048 GO:0005515
Trre15g04995 997 Pfam IQ calmodulin-binding motif 874 893 IPR000048 GO:0005515
Trre15g04995 997 ProSiteProfiles Ankyrin repeat region circular profile. 677 703 - -
Trre15g04995 997 Pfam CG-1 domain 24 137 IPR005559 GO:0003677
Trre15g04995 997 ProSiteProfiles IQ motif profile. 872 900 IPR000048 GO:0005515
Trre15g04995 997 ProSiteProfiles IQ motif profile. 849 878 IPR000048 GO:0005515
Trre15g04995 997 Pfam IPT/TIG domain 445 530 IPR002909 -
Trre15g04995 997 ProSiteProfiles Ankyrin repeat profile. 677 709 IPR002110 GO:0005515
Trre15g04995 997 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 843 899 IPR027417 -
Trre15g04995 997 FunFam Calmodulin-binding transcription activator 2 438 535 - -
Trre15g04995 997 SMART CG_1_2 21 139 IPR005559 GO:0003677
Trre15g04995 997 ProSiteProfiles CG-1 DNA-binding domain profile. 18 144 IPR005559 GO:0003677
Trre15g04995 997 SMART ANK_2a 677 706 IPR002110 GO:0005515
Trre15g04995 997 SMART ANK_2a 644 673 IPR002110 GO:0005515
Trre15g04995 997 Gene3D Immunoglobulins 438 536 IPR013783 -
Trre15g04995 997 SUPERFAMILY E set domains 445 530 IPR014756 -
Trre15g04995 997 FunFam Calmodulin-binding transcription activator 2 848 896 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04995 Trre-Chr15 59892646 59900325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04995 377 993 CAMTA Transcription Factor Family AT5G64220 42.563 4.02e-158 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre15g04995 CG-1 2.2e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04995 K21596 - gmx:100818336 1477.61