Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04981 ATGGTAGCAGAAGCCGAAATTATATGTCAACAAACCATTTCTATGTTGGATGTAAAATATCATCTTTGTGTTGCACAAGAACACAACGTCAAAGTTGAGATTTCACCTACCTCTCCTACACCTTCTATTCCAATCTTTGCCCATGCTGTGAATTGCTCCGAGATCATTAACGATTCCATGTTGGAGACCCCGGCGAAGATGTTTATCCCAAATGTGCGTTCTGGTAGCTGTGCCGATATTGGACCAAGGGGATCTATGGATGATGAGCACATTCAGATAGATGATCTAGCTTGTCACCTTGGATTTGTGTTCAAGTACCCGATACCAAGTGCGTTTTATGCGGTTTTTGATGGGCATGGTGGGCCTGAAGCTGCTTCCTTTGTTAAGAGGAATGCTATGAGATTATTTTTTGAAGATGCTGATATGATACAATCATATGATTCATACGGTACTGATGCGTGTTTTTTAGAGAAGTTGGAGGACTCTCATAGGAGAGCTTTTATACGGGCAGATCTTGCCTTGGCACATGAACAAAGTGTTAGTAGTTCATGTGGGACTACAGCACTTACTGCCCTTGTACTTGGAAGACATTTGCTTGTTGCTAATGCTGGTGACTGTCGAGCAGTTCTTTGCAGGCGAGGTGCAGCTGTTGAGATGTCTCATGATCACAAACCAAATTATTTACCTGAACGAAGGAGAGTGGAGGAGATAGGTGGCTACATTGATGATGGATATCTTAACGGTTATCTCTCGGTAACTCGTGCCCTCGGGGATTGGGACTTAAAATTTCCACTTGGTGCTGCATCTCCTCTTATTGCCGAGCCAGATGTTCAACTGGTTACATTGACAGAAGAGGATGAGTTCTTGATCATTGCGTGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGCCGTGGATTAAGAAGGCACAACGACCCAAATCAAAGTGCAAGAGATCTAGTCAAGGAAGCACTGCGCCTGAATACATCCGATAATCTCACTGTGATAGTTATATGTTTGTCACCTGTTGAAAAGTTTGCTGAATCATGTCCACCCCAAAGGCGAAGATTCAAAGCTTGCAGTATTTCTGAAGAGGCTCGTAATAGATTGAAGAGCTTGATAGAGGGAAATTGA 1152 0.4314 MVAEAEIICQQTISMLDVKYHLCVAQEHNVKVEISPTSPTPSIPIFAHAVNCSEIINDSMLETPAKMFIPNVRSGSCADIGPRGSMDDEHIQIDDLACHLGFVFKYPIPSAFYAVFDGHGGPEAASFVKRNAMRLFFEDADMIQSYDSYGTDACFLEKLEDSHRRAFIRADLALAHEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGAAVEMSHDHKPNYLPERRRVEEIGGYIDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVQLVTLTEEDEFLIIACDGIWDVMSSQVAVSLVRRGLRRHNDPNQSARDLVKEALRLNTSDNLTVIVICLSPVEKFAESCPPQRRRFKACSISEEARNRLKSLIEGN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04981 383 SMART PP2C_SIG_2 88 346 IPR001932 -
Trre15g04981 383 FunFam Probable protein phosphatase 2C 22 58 349 - -
Trre15g04981 383 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169
Trre15g04981 383 PANTHER PROTEIN PHOSPHATASE 2C 65 344 IPR015655 GO:0004722|GO:0006470
Trre15g04981 383 Pfam Protein phosphatase 2C 81 338 IPR001932 -
Trre15g04981 383 CDD PP2Cc 72 346 IPR001932 -
Trre15g04981 383 SMART PP2C_4 63 344 IPR001932 -
Trre15g04981 383 ProSiteProfiles PPM-type phosphatase domain profile. 73 346 IPR001932 -
Trre15g04981 383 SUPERFAMILY PP2C-like 67 348 IPR036457 -
Trre15g04981 383 Gene3D - 61 352 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04981 Trre-Chr15 59768835 59770572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04981 1 382 PP2C-type Phosphatase Gene Family AT1G48040 56.203 2.81e-144 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04981 K14803 - gmx:100775577 647.506