Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04976 ATGGATGTAAAGGGAAGAGGAAACAAAAACAACCATATGATGAGTAGTAGTGAAGAGGATGAAATGGACCTTAGAAGAGGCCCATGGACCGTGGATGAGGATCTAACCCTCATCAATTACATTGCTACTCATGGTGAAGGTCGTTGGAATACCCTAGCCAACTCTGCTGGTCTCAAGCGAACAGGTAAGAGTTGTAGATTGAGGTGGTTGAACTATCTTCGACCTGATGTTAGACGTGGAAATATTACACTCGAAGAACAACTTTTGATCCTCGAGCTCCATACTCGTTGGGGTAACAGATGGTCGAAAATAGCCCAATATTTACCCGGAAGAACAGACAATGAAATAAAGAATTATTGGAGAACTCGTGTACAAAAGCTTGCAAAACAACTCAAATGTGATATCAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGGCTAGTCGAACGCATTCAAGCAGCTTCCGTCACAACTTCCACCACCACAAACGTCGCAACCAATGCCACATACAACAACGCCAACAATAATCACAATGGCAAAATGATGGGTTCAACTCCGACAATTACAAACAATGATTTTGTGAGTTCACAACCACTTATGACACAAAGTTATACCCTAGAGAGAAGCAACACAACCACATCATCAGATTCATTTGAGAATAAGGTGTCAACAATATCAGAATTGGGTGATAATAATCATAATTATTACACAAGTTTTGATCATAAGGATCATAACCCTAATCCAAATTTAGATTATTATCAACCCTCTCATCAATCGTCAGGATTGTTCTATCCAGAGTTCGATTTTCAATCTATGGAACCAAACACGCCGTGGATGCAAAATGGGGACTCATCCGACATTTTTTGGAATTCTGAAAACATGTTGTTTTTACAGCAACAACTCATGAATGACACCATGTAA 936 0.4006 MDVKGRGNKNNHMMSSSEEDEMDLRRGPWTVDEDLTLINYIATHGEGRWNTLANSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKQLKCDINSKQFKDTMRYLWMPRLVERIQAASVTTSTTTNVATNATYNNANNNHNGKMMGSTPTITNNDFVSSQPLMTQSYTLERSNTTTSSDSFENKVSTISELGDNNHNYYTSFDHKDHNPNPNLDYYQPSHQSSGLFYPEFDFQSMEPNTPWMQNGDSSDIFWNSENMLFLQQQLMNDTM 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04976 311 Gene3D - 23 79 - -
Trre15g04976 311 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Trre15g04976 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Trre15g04976 311 CDD SANT 28 73 IPR001005 -
Trre15g04976 311 SMART sant 78 126 IPR001005 -
Trre15g04976 311 SMART sant 25 75 IPR001005 -
Trre15g04976 311 FunFam MYB transcription factor 83 146 - -
Trre15g04976 311 MobiDBLite consensus disorder prediction 1 24 - -
Trre15g04976 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Trre15g04976 311 CDD SANT 99 122 IPR001005 -
Trre15g04976 311 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Trre15g04976 311 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Trre15g04976 311 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Trre15g04976 311 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 210 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre15g04976 311 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Trre15g04976 311 Gene3D - 83 146 - -
Trre15g04976 311 FunFam Myb transcription factor 26 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04976 Trre-Chr15 59725684 59727743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04976 1 295 MYB Transcription Factor Family AT3G06490 51.692 1.26e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre15g04976 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04976 K09422 - gmx:100791349 395.201