Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04969 ATGAATGTTTTTGTATTTGTCCTTCAATTCCTATGTTTCATTCTTCTAACTACCAAATACTCCTTGTTCATAAAAGCATATGAAATAAATGCTGAAAAAACATATGAATCTGATAGAATAATTGATCTACCAGGACAACCTTCAGCCCCATCTGTCTCACATTTTTCAGGTTACATCACTGTCAATGAAGAACATGGAAGGGCCCTTTTCTATTGGTTCTTTGAAGCTCAATCTCAGCCATCCAATAAGCCTCTACTTCTTTGGCTCAATGGAGGACCTGGATGCTCCTCAATAGGATATGGTGCTGTTGTTGAGATAGGACCTCTTTTAGTCAACAAGAATGGGGAAGGACTATTATTCAATCCAAACTCTTGGAATCAAGAAGCAAATTTATTATTTGTGGAGTCCCCTGTTGGAGTTGGTTTTTCTTATACAAACACTTCTTCTGATCTAACCATTTTAGAGGATCATTTTGTGGCTGAGGATACCTACAATTTCTTGGTGAATTGGCTACAAAAATTTCCACAGTTTAAATCTAGGGACTTTTACATAGCTGGAGAAAGCTATGCTGGCCACTATATCCCTCAGCTTGCAGAAGTAATCTTTGACAGAAACAAAGATAAAAACAAATACTCCTTTATTAATCTTAAAGGTTTCATTGTAGGGAATCCAGAAACTGATGATTACTATGATTATAAAGGCATAGTTGAATATGCTTGGAGTCATTCAGTTATATCAGATCAACATTATGACAAAGTAAAACAAGTTTGTGATTTTAAGAAATCTGAATGGTCTAATGAATGCAATCAAGTCATGAGTGAACTCTTCCATTATTACTCAGAAATTGACATATACAACATTTATGCTCCAGCATGTCTTTCAAATAGTACATCCTCAGTAACAACTATTAATGTCCCTCAATCATTTAAAGAGGTGAAAAATGATTATAGATTCAAGAGGAAGAGAATTTTTGGGGGCTATGACCCTTGTTATTCCAATTATGCACAAGAATTTTTCAATAGGGCAGATGTTCAATCATCTTTTCATGCAAAAAATACTATAAGAGATAACAGTAACATAACATGGCAAGTTTGCAACAATTCCATATTGAGGACTTACAACTTCTCTGTTTTTTCCGTCCTACCTATCTACACCAAACTCATCAAGGGTGGTCTTAAGATATGGATCTACAGTGGAGATGCAGATGGTAGATTACCTGTGATAGGGACACGATATGGTATTGAGGCTCTTGGGTTACCTCTAAAGTCCACTTGGAGGTCATGGTACCATAATAATCAGGTTGGAGGAAGGATAGTGGAGTATGAAGGGTTGACGTATGTGACAGTGAGAGGAGCTGGACACTTAGTGCCTCTCAACAAACCAACTGAGGCTCTTTCTCTTATTCATTCTTTCCTTACTGGAGATCATCTCCCTACCACACGTTAA 1446 0.3679 MNVFVFVLQFLCFILLTTKYSLFIKAYEINAEKTYESDRIIDLPGQPSAPSVSHFSGYITVNEEHGRALFYWFFEAQSQPSNKPLLLWLNGGPGCSSIGYGAVVEIGPLLVNKNGEGLLFNPNSWNQEANLLFVESPVGVGFSYTNTSSDLTILEDHFVAEDTYNFLVNWLQKFPQFKSRDFYIAGESYAGHYIPQLAEVIFDRNKDKNKYSFINLKGFIVGNPETDDYYDYKGIVEYAWSHSVISDQHYDKVKQVCDFKKSEWSNECNQVMSELFHYYSEIDIYNIYAPACLSNSTSSVTTINVPQSFKEVKNDYRFKRKRIFGGYDPCYSNYAQEFFNRADVQSSFHAKNTIRDNSNITWQVCNNSILRTYNFSVFSVLPIYTKLIKGGLKIWIYSGDADGRLPVIGTRYGIEALGLPLKSTWRSWYHNNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPTEALSLIHSFLTGDHLPTTR 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04969 481 Gene3D alpha/beta hydrolase 32 303 IPR029058 -
Trre15g04969 481 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 41 461 IPR001563 GO:0004185|GO:0006508
Trre15g04969 481 SUPERFAMILY alpha/beta-Hydrolases 36 478 IPR029058 -
Trre15g04969 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Trre15g04969 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 444 457 IPR001563 GO:0004185|GO:0006508
Trre15g04969 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Trre15g04969 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Trre15g04969 481 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
Trre15g04969 481 FunFam Carboxypeptidase 380 474 - -
Trre15g04969 481 Pfam Serine carboxypeptidase 44 473 IPR001563 GO:0004185|GO:0006508
Trre15g04969 481 Gene3D - 330 369 - -
Trre15g04969 481 Gene3D - 380 474 - -
Trre15g04969 481 ProSitePatterns Serine carboxypeptidases, histidine active site. 444 461 IPR033124 GO:0004185
Trre15g04969 481 FunFam Carboxypeptidase 327 477 - -
Trre15g04969 481 FunFam Carboxypeptidase 34 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04969 Trre-Chr15 59646896 59651163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04969 354 477 Calmodulin-binding Proteins AT2G22960 32.800 1.36e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04969 K16297 - gmx:100815141 814.683