Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04944 ATGAACTACAACCGTCGTAGTCCCGGTGGTTTCCGTACCGCTCCTCTCCATCGTAATTTTGATAGTCCTCCTAGTTGGTCTCCTGGTAGGGTTGGAGGTGGAGGTTTCCGTCCACCACCTGCCGGAGATGGTTTCAGGCCGATTAGTGGTGAAGGTCCTGGAGAATTTGGATTCAATAATCATCAGCCATCTTCGCTTTCTGGTCAGAAACGAGGATTTCCTTTCTCTGGACGTGGTGCTTCACCGGATCGCTTTGACGGTGGAAGTTTTGCCAAACTTTTTGTTGGGTCTGTTCCCCGGACAGCATCTGAGGAAGATATTCGTCCTTTGTTTGAGGAGCACGGGAATGTCGTTGAGGTCGCCCTAATCAAAGATAGAAAGACAGGACAACATCAAGGTTGTTGTTTTATAAAATATGCTACCTCAGAGGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAACATACCCTTCCCGGAGGTGTTGGTCCCATCCAAGTGCGGTATGCTGATGGCGAACGGGAACGCCTTGGTGCAGTTGAGTACAAACTATTTGTCGGCTCTCTGAATAAACAGGCTAGCGTAAAAGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAACAAGCAGAGTCGTGGATGTGGTTTTGTCAAATACTCTCATAGAGATATGGCACTGGCAGCTATTAATGCACTTAATGGAATATATACAATGAGAGGTTGTGATCAACCACTGATTGTCCGTTTTGCTGATCCTAAAAGACCCCGCCAAGGAGATTCCAGAAGTCCTGCATTTGGAGCTTCAGGTTTTGGTCCTAGATTTGATTCACCGGGCACTAGACTTCCATCAAATAATTCTGATCCTATGGGTGATCATATGCCTCCCCCTAATGCTTGGCGTCCAATTCATCAACCAAACACGGGGCCATCCTTCAATGCTGGTTTTCATGCCATGGGGCCTCCATTGATACCAAGATCCGGCGACATGGCATTGCCTATAAATGCAGGCGGTTCTATGACTGGCATGGGAGTCTCCATAGATGGTCGTTTTCAAGCTCAGTCTCCGTCAGCAATGCCACCACAGAATTTCAACCAGCCTCTACCGAAAATTCCACCAGGCAATCAACAAATACCTCAATCACAGAAACCTATCCACTCATCTCAGGAATTTCCACCTTCACACCAGTTATATCCTCAAGCTCCAATGCCCTATCCACAGACATCTACACTTCCATCTACCAGGCAGCACGGTCAGCCACAACCTCTCTCTGCTGGCCCGCAGGGACCGGGCATAAGTACACAGTTTTCAGTTTCTCAGCCTCAAACTCAGCAGAGTGTTTTGCCTGCTACATTTCCTCACACCTCTCATGATACCAGCATTCAATCTAATACAACATTGACTACACCAAGTAGACAACAAATTCCTCCCTCTATGCAGCAGCAACCACAGCCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGTTGGTGTCTCAACAAACTCAGACTTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCTCAGCTTCAACAACAATTACAGATGATACAACCATCTAGTCAAGCATCAACATTGCAGCATCACACAGAAGCTACTAAAACACAGTCTCAATGGGGTGGGACTGCATCACATGCAGCGACCGGCACTCATGTGGCTGCACCTGCTGTTGGTGCTCCTTCATCAACATCTGCTGCTTCTTCTGTACAAGCAATAGGCCAGAACACAACTCTTGCAAAATGTAATTGGACAGAGCATTTATCTCCCGAGGGCTTTAAATACTACTACAATAGTGTGTCTGGGGAAAGCCGGTGGGAGAAACCCGAAGAGTTGACATTATTTGAACAGCAACAGCACAGGCAGTCTGCTCAGCAGCCTCACATTCAGTCACAGCCTTCAATACCACCCACCCAGCAAATTCCACCAAACCAACAGGTTCAGCCTCAAAGCCATTTCCGAGAACAAGTTCTCCAGCATCAACAAATACAGCAACCATCCTCATTCCAGGCGGCATATGGAGTTACAGGTCATCAAAATGTTCAGGAACTCGGTTATAAACAGTTACAGTCGTCATTTGTTTCTGCTGGTGATTCTGGACGTTATTCACAGGGTATTAATACTACACAAGAGCTGATGTGGAAAAACAGGCCTGCAGGTTCTAGTCCTTGA 2229 0.467 MNYNRRSPGGFRTAPLHRNFDSPPSWSPGRVGGGGFRPPPAGDGFRPISGEGPGEFGFNNHQPSSLSGQKRGFPFSGRGASPDRFDGGSFAKLFVGSVPRTASEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRVEDVYLMRDENKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRSPAFGASGFGPRFDSPGTRLPSNNSDPMGDHMPPPNAWRPIHQPNTGPSFNAGFHAMGPPLIPRSGDMALPINAGGSMTGMGVSIDGRFQAQSPSAMPPQNFNQPLPKIPPGNQQIPQSQKPIHSSQEFPPSHQLYPQAPMPYPQTSTLPSTRQHGQPQPLSAGPQGPGISTQFSVSQPQTQQSVLPATFPHTSHDTSIQSNTTLTTPSRQQIPPSMQQQPQPLQPLQQSPSQLAQLVSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQASTLQHHTEATKTQSQWGGTASHAATGTHVAAPAVGAPSSTSAASSVQAIGQNTTLAKCNWTEHLSPEGFKYYYNSVSGESRWEKPEELTLFEQQQHRQSAQQPHIQSQPSIPPTQQIPPNQQVQPQSHFREQVLQHQQIQQPSSFQAAYGVTGHQNVQELGYKQLQSSFVSAGDSGRYSQGINTTQELMWKNRPAGSSP 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04944 742 Pfam WW domain 602 628 IPR001202 GO:0005515
Trre15g04944 742 Gene3D - 597 646 - -
Trre15g04944 742 SUPERFAMILY RNA-binding domain, RBD 76 176 IPR035979 GO:0003676
Trre15g04944 742 MobiDBLite consensus disorder prediction 635 673 - -
Trre15g04944 742 SMART ww_5 598 630 IPR001202 GO:0005515
Trre15g04944 742 MobiDBLite consensus disorder prediction 715 742 - -
Trre15g04944 742 SUPERFAMILY WW domain 602 635 IPR036020 GO:0005515
Trre15g04944 742 ProSiteProfiles WW/rsp5/WWP domain profile. 603 630 IPR001202 GO:0005515
Trre15g04944 742 MobiDBLite consensus disorder prediction 635 654 - -
Trre15g04944 742 MobiDBLite consensus disorder prediction 1 83 - -
Trre15g04944 742 FunFam flowering time control protein FCA isoform X2 85 177 - -
Trre15g04944 742 MobiDBLite consensus disorder prediction 354 504 - -
Trre15g04944 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 172 IPR000504 GO:0003723
Trre15g04944 742 MobiDBLite consensus disorder prediction 262 329 - -
Trre15g04944 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 250 IPR000504 GO:0003723
Trre15g04944 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 156 IPR000504 GO:0003723
Trre15g04944 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 262 IPR000504 GO:0003723
Trre15g04944 742 PANTHER RNA BINDING PROTEIN 60 525 - -
Trre15g04944 742 ProSitePatterns WW/rsp5/WWP domain signature. 603 628 IPR001202 GO:0005515
Trre15g04944 742 MobiDBLite consensus disorder prediction 384 504 - -
Trre15g04944 742 MobiDBLite consensus disorder prediction 540 564 - -
Trre15g04944 742 SMART rrm1_1 92 168 IPR000504 GO:0003723
Trre15g04944 742 SMART rrm1_1 183 258 IPR000504 GO:0003723
Trre15g04944 742 FunFam Flowering time control protein FCA 178 268 - -
Trre15g04944 742 CDD WW 600 630 IPR001202 GO:0005515
Trre15g04944 742 Gene3D - 178 270 IPR012677 -
Trre15g04944 742 Gene3D - 88 177 IPR012677 -
Trre15g04944 742 SUPERFAMILY RNA-binding domain, RBD 182 283 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04944 Trre-Chr15 59455852 59464852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04944 89 268 Eukaryotic Initiation Factors Gene Family AT1G71770 25.510 7.55e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04944 - - tpra:123920645 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04944 15 59455852 59464852 Trre15g04944 15 59455852 59464852 ECH