LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g04942	ATGGCTTTGCAGTTAGTAATATTATTGTGTCTAGTAACTTCAGCATTTGCAGCCAAAGTGAATGAAGCCTATGGTGGTGACATTACTGGAAGTCCATTAGGGATTGGCATATATCAATACAGTTGCCCTGAAGCAGAGAATATAATCTTCTCTTGGGTGGAACAAGCTGTCTCTAGTGACCCAAGAATGGCAGCTTCATTGCTTAGGCTTCATTTTCATGATTGCTTTGTCAATGGTTGTGATGCTTCAGTCTTGCTGGATGACACAGCAAACTTTGTTGGCGAGAAAACTGCTGCTCCAAACGTGAATTCACTTAGAGGATTTGAAGTAATCAATGAAATAAAATCTGAACTAGAACTTGTATGTCCACAAACTGTTTCTTGTGCTGACATACTGGCAGCTGCTGCTCGAGATTCGGTTCTTCTGTCAGGAGGACCAACTTGGGAGGTGCAAATGGGGAGAAAAGATAGTATAACAGCTAGCAAGGAAGGGGCAAATAATAATATTCCAGGCCCAAACTCAACCGTTGATATGCTTGTGGCCAAGTTTGAAAACGTTGGCCTTACACTTCAGGACATGGTTGCCCTCTCAGGTGCGCACACGATCGGAAAAGCCCGCTGCTCAACATTTAGAGCTCGCTTACAAAGTAACGGCGTCTCAGACGGTCCATATGTTAATGCTGAATTTGTTGCATCATTGCAACAATTGTGCTCAGGACAAGATAATAGAAACCGAATTGCACATCTCGACCTGGCCACACCAGCTACATTCGATAACCAATACTATATCAATCTTCTCTCTGGGGAAGGATTGCTTCCATCAGACCAGACTCTGGTGAATGGGAATGATCAAACAAGACAGATTGTCGAAACCTATGTAGAGAACCCGTTTGCTTTCTTTCAGGACTTCAAGAATTCAATGATAAAAATGGGAAGCTTGGGATCAGTCACGCAGAGTAACGGACAGATTCGTAGGGACTGTCGAACTATTAACTAA	996	0.4307	MALQLVILLCLVTSAFAAKVNEAYGGDITGSPLGIGIYQYSCPEAENIIFSWVEQAVSSDPRMAASLLRLHFHDCFVNGCDASVLLDDTANFVGEKTAAPNVNSLRGFEVINEIKSELELVCPQTVSCADILAAAARDSVLLSGGPTWEVQMGRKDSITASKEGANNNIPGPNSTVDMLVAKFENVGLTLQDMVALSGAHTIGKARCSTFRARLQSNGVSDGPYVNAEFVASLQQLCSGQDNRNRIAHLDLATPATFDNQYYINLLSGEGLLPSDQTLVNGNDQTRQIVETYVENPFAFFQDFKNSMIKMGSLGSVTQSNGQIRRDCRTIN	331

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g04942	331	Pfam	Peroxidase	53	294	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Trre15g04942	331	ProSitePatterns	Peroxidases active site signature.	64	75	IPR019794	GO:0004601
	Trre15g04942	331	PRINTS	Haem peroxidase superfamily signature	64	78	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Trre15g04942	331	PRINTS	Haem peroxidase superfamily signature	144	156	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Trre15g04942	331	PRINTS	Haem peroxidase superfamily signature	250	265	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Trre15g04942	331	PRINTS	Haem peroxidase superfamily signature	126	143	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Trre15g04942	331	PRINTS	Haem peroxidase superfamily signature	192	207	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Trre15g04942	331	CDD	secretory_peroxidase	33	328	IPR033905	GO:0004601\|GO:0042744
	Trre15g04942	331	FunFam	Peroxidase	170	310	-	-
	Trre15g04942	331	Gene3D	Peroxidase, domain 2	170	311	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g04942	Trre-Chr15	59453084	59454512	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g04942	25	331	Peroxidase	AT4G16270	63.407	7.28e-141	400

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g04942	K00430		-	gmx:100787637	533.872

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