Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04940 ATGGCGAATTCTTCGGCAGCAGCATTTCTGGATGAGATTCCAAACAAGAAGAACAAAGAAAGTTGCATAATCAATTTCCCTTTCTCACCAGCTTTACCATCATGCAGCATCTTTGATATGATACCCCCACCCCCACCATCACAATCTGATGATCATCATAAAAAAGCTTCTTCCTTTGGTTACATGGACTTGTTAACTACACAAGATTTCACTACTTCTTCAACTTTATTCGATTGGTTCCCCACCATTGATCCTGACCTTCAGCTGCCTCCTCTTCCGATACCGTCCCCGACCGCAACTTCTGAAGTTTTAAACAATCCGGCCACCCCTGTCTCTCTTTCATCATCGATTTCTTCATCTTCCCATGAAGCTGGTGCTGTTGCTAACAAATCAGTAATAGCAGTAGCAGAGAATGAAGATGAACTTGAATTTGAAGATGGAGTAGCTGAACCAGATGAGAAAAATGGAGATCGTGGGATCAGATTTGTGGAGAATCAAAATCAGACCAAGAAACAGGTGGTGAAACCTGCAAAGAAGAGGAAGAACAATAAGCCAAGACCACCAAGAATTACTTTCAAGACAAGGACGGATGTTGATCATTTAGATGATAGTTATAGATGGCGCAAGTATGGTCAAAAACCTGTCAAAAACAGCCCTTATCCAAGGAGCTATTACCGTTGCACCGCCATTGGTTGTGAGGTGAAGAAGCGTATTGAGCGTTCGGCCACTGAAGCTTCCGTGGTGCTAACTAGCTATGAAGGCAAACACAACCACATATCCCCAGCTGCGTTGCGTGCTGCTAACTTTGGGATGATGCAAAATCCTTCTGGTTTCCAAGAACAGATTCACCAACACCACAATATACCTGATGGTGTTGGTGATGATGTTGTTGGAAACCAAGTTGCAATGTCTCAATCGCAACAGTATCAACAATTTCAGGATCAGAATCAGAATGTTCGTCAGCAGCAGCAAGCAGTGCCATCTTTGTTATATAATAATGACTATAACAACTCCTTCAACACTGCTCCACCTGTGAGTGTTGTTAACTCTGCTGATAATTTTATGGACTCTTCAGCATCTTTGCGTGCGTTGCTTCAAAATCAACAGAACTATGGTGAAGATATTCGGGTGAGGAACAATGGACTTCTTCAGGACATGATTGTGCCAATGGAGATTGGAGGAGCTAGAGCTAGAGCTGGAGTTGGAGAAGGAACTTCAAGAACATGA 1227 0.4295 MANSSAAAFLDEIPNKKNKESCIINFPFSPALPSCSIFDMIPPPPPSQSDDHHKKASSFGYMDLLTTQDFTTSSTLFDWFPTIDPDLQLPPLPIPSPTATSEVLNNPATPVSLSSSISSSSHEAGAVANKSVIAVAENEDELEFEDGVAEPDEKNGDRGIRFVENQNQTKKQVVKPAKKRKNNKPRPPRITFKTRTDVDHLDDSYRWRKYGQKPVKNSPYPRSYYRCTAIGCEVKKRIERSATEASVVLTSYEGKHNHISPAALRAANFGMMQNPSGFQEQIHQHHNIPDGVGDDVVGNQVAMSQSQQYQQFQDQNQNVRQQQQAVPSLLYNNDYNNSFNTAPPVSVVNSADNFMDSSASLRALLQNQQNYGEDIRVRNNGLLQDMIVPMEIGGARARAGVGEGTSRT 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04940 408 MobiDBLite consensus disorder prediction 142 193 - -
Trre15g04940 408 Coils Coil 302 322 - -
Trre15g04940 408 Gene3D WRKY domain 187 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g04940 408 ProSiteProfiles WRKY domain profile. 196 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g04940 408 SUPERFAMILY WRKY DNA-binding domain 194 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g04940 408 Pfam WRKY DNA -binding domain 202 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g04940 408 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 103 318 IPR044810 GO:0003700
Trre15g04940 408 SMART WRKY_cls 201 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g04940 408 MobiDBLite consensus disorder prediction 173 188 - -
Trre15g04940 408 FunFam WRKY transcription factor 57 187 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04940 Trre-Chr15 59434505 59436287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04940 151 266 WRKY Transcription Factor Family AT4G18170 55.085 2.19e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre15g04940 WRKY 2.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04940 - - mtr:11409051 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04940 15 59434505 59436287 Trre15g04940 15 59434505 59436287 ECH