Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04936 ATGACATCACCATCTACAACAACAACACCAAACATAACAACAAACACAGACTCAAAAAGAAAGAAAAGAAAAAACAGAGCACAAAAAAATCTTCAAGATCAGCTTCAAAACACCCACCCAAAATGGAAATCACAAGCACAACAACAAATCTACTCAAACAAACTCCGTCAAGCCTTAACAAGAGTCAACACACGCCGTGGAAAAGCCGTCCGAGAAGCCGCCGATAAAGCACTAGCCATGACAGCAAAAGGAAGAACTCGATGGAGCAGAGCCATTTTAACAACCAGGCTCAAACTCAAGTTTAGAAAAAAGAAACAGAAACAGAGACTAACGGCTTCGCCGTTAAATCGATCAAAGAAATCAAGAATCAACGTTTTACGGTTGAAGGGGAAGGTGGTTCCAAGTGTGCAGAGGAAAGTAAAGTTTCTTGGAGGATTGGTTCCTGGTTGCAAAAAGGAACCATTACCGGTTATTCTAGAAGAAGCTATTGATTATATACCTGCGCTTGAGATGCAGGTTCGAGCTATGAGTGCTCTTTTTAATCTTCTTTCTGCTTCTACTTCCGGCGGTGGTGCCGGTGTTGGCTCCGGTTCCGGTTGA 600 0.4267 MTSPSTTTTPNITTNTDSKRKKRKNRAQKNLQDQLQNTHPKWKSQAQQQIYSNKLRQALTRVNTRRGKAVREAADKALAMTAKGRTRWSRAILTTRLKLKFRKKKQKQRLTASPLNRSKKSRINVLRLKGKVVPSVQRKVKFLGGLVPGCKKEPLPVILEEAIDYIPALEMQVRAMSALFNLLSASTSGGGAGVGSGSG 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04936 199 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 44 183 IPR044660 GO:0006355
Trre15g04936 199 MobiDBLite consensus disorder prediction 30 48 - -
Trre15g04936 199 MobiDBLite consensus disorder prediction 1 15 - -
Trre15g04936 199 CDD bHLH_AtIBH1_like 125 179 IPR044549 GO:0006355
Trre15g04936 199 MobiDBLite consensus disorder prediction 1 48 - -
Trre15g04936 199 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 186 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04936 Trre-Chr15 59376676 59377275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04936 37 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 53.143 1.58e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04936 - - gmx:100803765 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04936 15 59376676 59377275 Trre3g01567 3 12441255 12441911 PCT