Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04925 ATGATGGGAAGTGAAGAAAGAGAGAAAGTAGTGAAGAAGAAGATCCAAGACTTAGAAGAAGAACATGCTTTCATGAAACAAGAAATGTCAAAGCTTAAGTTTAATGATGGTAAAGAACAACAACAACAACAACAACAACAACAACATCGTCAAAGGTCTCACTCTGTGTCTCCTCAACGTTCTAGATTAGGTTCATGGAACAAAGGTTCTTGTTCTTTTAAACACTCTTCACCTCTCAGAAAGGAAACTCATGCTCATACTCATACACTCATCAATTTCACTGAAAAACATTATCTCAATATTTTGCACTCTTTGGGCCATTCTGTTCATATCTTGGATCTTAACTCTCGTATCATTTATTGGAACCGTAGTGCTGAAAAGCTGTATGGTTATGCAGAAGAGGAAGTTTTGGGACAGGATGGGGTTGATTTGCTTGTGGACTCTAGGGATTGGGGGTTAGCTCATGATACAGTGAATTGTGTCATGAATGGAGAAAGATGGAGTGGTCAATTCCTAGTCAAGAATAAGAAAGGAGATAGCTTTTTAGCTGTAACAACCAATACTCCTTTTTACGATGATGGAAACTTAGTTGGGATTATCTGTGTGTCGAGTGATTCGCGGCCGTTTCTCGAAATGAGGGCTCCGTTTTTTGGTGTAAAGAATGCTGAATCGGATCATGGTTCTATGCGTCGTAGCAGTAGTGTTGCAAATAAACTTGGCTTTGATTCTCAGCAGCCACTTCAAACTGCTATAGCATCTAAGTTTTCGAATTTGGCGTCGAAGATGAGTAACAAAGTTAAGTCGAGAATCTGGACGGGAGAAAATAATGTGGACCGTGAAGGTGGGAATGGAGAAAGTTATCATTCTGAACTTGGTTTCTCAGAACACCGAGAAGATGCTAATTCTAGTGGAGCTACTACACCTAGAGGTGATTTGCCACAGTCCCCTCCTGGTGTATTTTATCGTGTTGAAGAAAAGTTTGAAGGAAAAACTTTGAGAGATTCTGGTGATGAGAGTGAAGGAAAACCTGTTCACAAAATTTTACCTACTAAGGCTGAAGCCTGGATTCAAAAGAAAACATTATCGTGGCCATGGAGAACAAATGACCGAGATGAATCAGAGGCAACAAATGTTCGTGCTGCTGATCCGTGGAGGCAGAATGATCAAGAAAATGAATCAGTTAATCAGAAGAATCTTTCTTCTGGTTTGAAGCACGAAAGCCAGGCTGGTGAAAATAATCGCCTTACTAACAATGAGGCTTCATTATCCCGTTCTTCCTCTTATAATGTTATTCTTAACAGCACGAGTAGCGCTAGCAGCTCTGGGAGTGCTGGCAGTGGTGCTGTAAATAGTAAAGTGGACGTAGACTCCGATTGTTTGGATTATGAAATATTGTGGGAGGATTTGACAATTCGAGAACAAATTGGACAGGGCTGTTGTGGAACTGTGTACCATGCTCTGTGGTATGGATCAGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAGTATTCAGATGATTTGATACAGTCCTTCAGGCAAGAGGTATCTGTCATGAAAAGACTTCGACACCCAAATATTCTTCTCTTTATGGGAGCAGTGACTTCACCTCAACGTCTCTGCATTGTCACGGAGTTTCTCCCACGTGGAAGCTTGTGTCGCTTGTTACATAGAAACACGCCCAAACTTGACTGGAGACGGCGAGTTCATATGGCTTTGGATATTGCACGAGGCGTAAATTATCTTCATCATTATAACCCACCTATCATTCATAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCACGAAACATATCTCACAACTAAGACAGGAAGAGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAACGAACCGTCAGATGAGAAGTCTGATGTATACAGCTTCGGGGTGATATTATGGGAACTTGCGACTGAAAAGATTCCTTGGGATAATCTCAACGCGATGCAGGTAATTGGAGCTGTCGGGTTCATGAATCAGCGTCCCGAAATTCCAAAAGATGTTGATCCAGGATGGGCTTCTTTAATTGAGATCTGCTGGCACAGTGATCCAACTTGCCGACCAACTTTCCCGGAACTGCTCGAAAAGCTTAAAGAGTTACAAAAACAGTATGTCATTCAGTTCCAAGCGGCCCGGTCTGCTGGTGGAGAAAGCACCCAAAGAAAAGAGTCCTAG 2247 0.4188 MMGSEEREKVVKKKIQDLEEEHAFMKQEMSKLKFNDGKEQQQQQQQQQHRQRSHSVSPQRSRLGSWNKGSCSFKHSSPLRKETHAHTHTLINFTEKHYLNILHSLGHSVHILDLNSRIIYWNRSAEKLYGYAEEEVLGQDGVDLLVDSRDWGLAHDTVNCVMNGERWSGQFLVKNKKGDSFLAVTTNTPFYDDGNLVGIICVSSDSRPFLEMRAPFFGVKNAESDHGSMRRSSSVANKLGFDSQQPLQTAIASKFSNLASKMSNKVKSRIWTGENNVDREGGNGESYHSELGFSEHREDANSSGATTPRGDLPQSPPGVFYRVEEKFEGKTLRDSGDESEGKPVHKILPTKAEAWIQKKTLSWPWRTNDRDESEATNVRAADPWRQNDQENESVNQKNLSSGLKHESQAGENNRLTNNEASLSRSSSYNVILNSTSSASSSGSAGSGAVNSKVDVDSDCLDYEILWEDLTIREQIGQGCCGTVYHALWYGSDVAVKVFSKQEYSDDLIQSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTPKLDWRRRVHMALDIARGVNYLHHYNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNAMQVIGAVGFMNQRPEIPKDVDPGWASLIEICWHSDPTCRPTFPELLEKLKELQKQYVIQFQAARSAGGESTQRKES 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04925 748 ProSiteProfiles PAS repeat profile. 94 165 IPR000014 -
Trre15g04925 748 ProSiteProfiles Protein kinase domain profile. 469 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04925 748 Pfam Protein tyrosine and serine/threonine kinase 469 721 IPR001245 GO:0004672|GO:0006468
Trre15g04925 748 MobiDBLite consensus disorder prediction 380 421 - -
Trre15g04925 748 CDD PAS 109 205 IPR000014 -
Trre15g04925 748 MobiDBLite consensus disorder prediction 36 68 - -
Trre15g04925 748 SUPERFAMILY PYP-like sensor domain (PAS domain) 94 205 IPR035965 -
Trre15g04925 748 PRINTS Tyrosine kinase catalytic domain signature 629 639 IPR001245 GO:0004672|GO:0006468
Trre15g04925 748 PRINTS Tyrosine kinase catalytic domain signature 582 600 IPR001245 GO:0004672|GO:0006468
Trre15g04925 748 PRINTS Tyrosine kinase catalytic domain signature 543 556 IPR001245 GO:0004672|GO:0006468
Trre15g04925 748 PRINTS Tyrosine kinase catalytic domain signature 648 670 IPR001245 GO:0004672|GO:0006468
Trre15g04925 748 PRINTS Tyrosine kinase catalytic domain signature 692 714 IPR001245 GO:0004672|GO:0006468
Trre15g04925 748 MobiDBLite consensus disorder prediction 366 421 - -
Trre15g04925 748 MobiDBLite consensus disorder prediction 295 318 - -
Trre15g04925 748 SMART pas_2 96 163 IPR000014 -
Trre15g04925 748 NCBIfam PAS domain S-box protein 95 205 IPR000014 -
Trre15g04925 748 PIRSF TyrPK_CSF1-R 6 116 - -
Trre15g04925 748 PIRSF TyrPK_CSF1-R 558 748 - -
Trre15g04925 748 PIRSF TyrPK_CSF1-R 449 563 - -
Trre15g04925 748 FunFam PAS domain-containing protein tyrosine kinase family protein 547 738 - -
Trre15g04925 748 Coils Coil 1 35 - -
Trre15g04925 748 Pfam PAS fold 97 203 IPR013767 GO:0006355
Trre15g04925 748 CDD STKc_MAP3K-like 475 721 - -
Trre15g04925 748 Gene3D Phosphorylase Kinase; domain 1 462 546 - -
Trre15g04925 748 SMART serkin_6 469 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04925 748 Gene3D PAS domain 107 208 - -
Trre15g04925 748 Gene3D Transferase(Phosphotransferase) domain 1 548 735 - -
Trre15g04925 748 SUPERFAMILY Protein kinase-like (PK-like) 458 720 IPR011009 -
Trre15g04925 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
Trre15g04925 748 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 228 727 - -
Trre15g04925 748 FunFam PAS domain-containing protein tyrosine kinase 462 546 - -
Trre15g04925 748 MobiDBLite consensus disorder prediction 26 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04925 Trre-Chr15 59293925 59299326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04925 13 747 MAP Kinase Kinase Kinase AT3G06620 56.314 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre15g04925 PK_Tyr_Ser-Thr 1.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04925 - - gmx:100785569 1113.21