Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04898 ATGGAAAATATCTTATCTGGTCAACTAGTTGGATCAGAGATACATGGATTCCACACATTGCAAGAGCTGGATGTTGCGAGCATTATGGAGGAAGCAAGAACAAGATGGCTTCGTCCCAATGAGATTCATGCCATGCTTTGTAATCACAAGTATTTCACCATCAATGTCAAGCCAATGAATTTGCCCAAAAGTGGCACTATTGTATTATTTGACCGCAAAAAGCTTCGGAATTTCAGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATTCATGTATATTATGCACATGGTCAAGATAGCCCAAACTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTTTGGAACACATTGTCCTAGTTCATTACCGTGAAACACAAGAGTCTCAAGGTTCTCCCATCACTCCCGTACATTCAAACTCTACTACTGCCTCTGACCCAACGGCACCATGGATTTTGTCAGAAGAAATAGATTCAGGGACCAAAACTCCATATGCTGGTGAGATTAATGACAATACAACAGTCAAAAGTCATGAACTGAGGCTTCATGAACTTAACACACTTGAATGGGATGACCTGGTGGTTGCAAACGATGTTAACACCTCTACTGTGCTTAATGGAGGAAAACTTCCATATTCTGATCAACAAAATCAAATTTTACTTAATGGCAGTTTTAGCAATGTAGCCAGCAATGCATCTGCGGGAATTAATTCTTTCGATAATTCAACTAAGCCAATTGCAGCGAGCAATAGTGTTCCATACAATTTTTCAGGTGTTACTCTTCAGACAATTTACAATCAAGGAAATCAAAATGACCAGAATAATCATCATGTATCTTCAAGTGGTGTTGATTCGTTAAACACTTTGGTCAATGACAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCAAATCATGTCTGATTCCCCTTGTTCAGTTGATGATTCTGCTCTGGGATCCTCAGTTACACCTGTTAACGAGCCATATTCATCTCTGGATGTGGATAATCAGCAACTTACCCTTCCAGAACAAGTATTTAATCTCACCGATGTGTCCCCTGTGTGGGTGTCTTCCACAGAGAAATCAAAGATTCTAGTGACTGGACTCTTTCATAAAGACTATTTGCACCTCCCAAAGTCCAATCTAATGTGTGTCTGTGGTGATGCAAGTGTTCCTGTAGAAATTGTTCAGGATGGGGTCTACCGATGTTGGGTACCACCGCATTCTCCGGGATTCGTGAATCTCTACTTGAGCTTTGATGGTCATAATCCTATCAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTGTTTTGCACGACCCAGTTGCTTCCATAGAAGAGAAGAACTGGGATGAGTTTCGACTTCAAATGAGGCTTGCTTATTTGCTCTTTGCTAAACAGCAGAGTCTTGATATCATCTCTAGTAAAGTATCACCTAGTAGACTAAAGGAAGCAAGAGAATTCTCCTTAAAGACATCGTTTATTTCTAATACTTGGCAATACTTATTGAAGTCAACTTTAGACAACCAAATTCCATTTTCACAAGCAAAAGATGAACTGTTTGGAATAGCATTGAAAAACAGATTAAAGGAATGGCTTTCAGAAAGAATTGTTTTAGGATATAAGACTACTGAATATGACGCACAGGGCCAAAGTGTCATCCATTTGTGTGCAATTTTGGAATATACATGGGCTGTTACTTTATTTTCATGGTCAGGCTTGTCGCTAGATTTTCGGGATAAATTTGGATGGACTGCTCTTCATTGGGCAGCATATTACGGCAGGGAGAAAATGGTTGCAACTTTATTGTCAGCTGGGGCAAAGCCAAATTTGGTCACAGATCCAACTCACCAAAACCCTGGTGGATGTACTGCCGCCGATCTTGCTTATACAAGGGGTTATCATGGCTTAGCAGCTTATCTTTCGGAAAAGTCTTTAGTTGAGCAATTCAATGACATGAGCTTAGCGGGAAATATCAGTGGCTCACTGGAAACCAGCACGGATGATCCAGTAAATTCCGAGAACCTTACCGAGGAACAGCTCTACCTTAAAGATACATTGGCAGCTTACCGTACAGCTGCCGATGCAGCAGCACGCATACAAGAAGCATATAGGCAGCATTCCTTAAAGTTACAAACTGAGGCGGTTGAGTTTTCCAATCCGGAAGCTGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTCCGCAATTTTGAAACAAAGAAAGTGATGGCTGCTGCTGCTCGCATACAACATAGATTCCGTACATGGAAGATTCGTAGAAATTTTCTCAACATGCGCCGTCAGGCTATCAAGATTCAAGCTGCTTTCAGGTCCTTTCAACAACGGAAACATTATTGTAAAATCCTTTGGTCAGTTGGTGTGGTTGAGAAAGCAGTGTTGCGTTGGCGTTTAAAGAGAAAGGGCTTCCGCGGGCTCCAGCTTAATACTGAGGAAGCGAATGGAGATCAGAATCAGCAAAGTGATGCAGAGGAAGAATTCTTTCGTACTAGTAGGAAACAAGCTGAAGAACGTGTTGAGAGAAGTGTAATACGAGTGCAGGCTATGTTCCGTTCTAAGAAAGCACAAGAAGATTACAGGAGGATGAAGTTGGCCCTTAATCAAGCAAAGCTGGAACGGGAATATGAAAAAGTGCTTAGTAATGAAGTTGACATGGAAATGAAGACCCAGTTTCGCCGAAGATCTTAG 2781 0.4114 MENILSGQLVGSEIHGFHTLQELDVASIMEEARTRWLRPNEIHAMLCNHKYFTINVKPMNLPKSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDSPNFVRRCYWLLDKSLEHIVLVHYRETQESQGSPITPVHSNSTTASDPTAPWILSEEIDSGTKTPYAGEINDNTTVKSHELRLHELNTLEWDDLVVANDVNTSTVLNGGKLPYSDQQNQILLNGSFSNVASNASAGINSFDNSTKPIAASNSVPYNFSGVTLQTIYNQGNQNDQNNHHVSSSGVDSLNTLVNDRLQSQDSFGMWVNQIMSDSPCSVDDSALGSSVTPVNEPYSSLDVDNQQLTLPEQVFNLTDVSPVWVSSTEKSKILVTGLFHKDYLHLPKSNLMCVCGDASVPVEIVQDGVYRCWVPPHSPGFVNLYLSFDGHNPISQVVNFEYRTPVLHDPVASIEEKNWDEFRLQMRLAYLLFAKQQSLDIISSKVSPSRLKEAREFSLKTSFISNTWQYLLKSTLDNQIPFSQAKDELFGIALKNRLKEWLSERIVLGYKTTEYDAQGQSVIHLCAILEYTWAVTLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTHQNPGGCTAADLAYTRGYHGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTDDPVNSENLTEEQLYLKDTLAAYRTAADAAARIQEAYRQHSLKLQTEAVEFSNPEAEARKIVAAMKIQHAFRNFETKKVMAAAARIQHRFRTWKIRRNFLNMRRQAIKIQAAFRSFQQRKHYCKILWSVGVVEKAVLRWRLKRKGFRGLQLNTEEANGDQNQQSDAEEEFFRTSRKQAEERVERSVIRVQAMFRSKKAQEDYRRMKLALNQAKLEREYEKVLSNEVDMEMKTQFRRRS 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04898 926 ProSiteProfiles Ankyrin repeat region circular profile. 603 631 - -
Trre15g04898 926 SMART CG_1_2 28 146 IPR005559 GO:0003677
Trre15g04898 926 Pfam IPT/TIG domain 369 454 IPR002909 -
Trre15g04898 926 SMART iq_5 869 891 IPR000048 GO:0005515
Trre15g04898 926 SMART iq_5 766 788 IPR000048 GO:0005515
Trre15g04898 926 SMART iq_5 789 811 IPR000048 GO:0005515
Trre15g04898 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 817 IPR027417 -
Trre15g04898 926 ProSiteProfiles Ankyrin repeat profile. 603 635 IPR002110 GO:0005515
Trre15g04898 926 Gene3D - 533 672 IPR036770 -
Trre15g04898 926 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Trre15g04898 926 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Trre15g04898 926 ProSiteProfiles IQ motif profile. 768 796 IPR000048 GO:0005515
Trre15g04898 926 Pfam Ankyrin repeats (3 copies) 566 632 IPR002110 GO:0005515
Trre15g04898 926 ProSiteProfiles IQ motif profile. 790 814 IPR000048 GO:0005515
Trre15g04898 926 Pfam IQ calmodulin-binding motif 792 810 IPR000048 GO:0005515
Trre15g04898 926 Coils Coil 925 926 - -
Trre15g04898 926 Coils Coil 883 903 - -
Trre15g04898 926 Gene3D Immunoglobulins 363 458 IPR013783 -
Trre15g04898 926 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 897 - -
Trre15g04898 926 SUPERFAMILY Ankyrin repeat 544 665 IPR036770 -
Trre15g04898 926 Gene3D - 764 814 - -
Trre15g04898 926 SUPERFAMILY E set domains 368 455 IPR014756 -
Trre15g04898 926 FunFam calmodulin-binding transcription activator 5 533 673 - -
Trre15g04898 926 ProSiteProfiles IQ motif profile. 871 899 IPR000048 GO:0005515
Trre15g04898 926 SMART ANK_2a 603 632 IPR002110 GO:0005515
Trre15g04898 926 SMART ANK_2a 642 673 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04898 Trre-Chr15 59105824 59114661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04898 28 903 CAMTA Transcription Factor Family AT3G16940 55.000 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre15g04898 Ank_2 1.1e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04898 K21596 - gmx:100793970 1489.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04898 15 59105824 59114661 Trre15g04898 15 59105824 59114661 ECH
Trre15g04898 15 59105824 59114661 Trre3g01616 3 12849444 12856275 PCT